The peroxidase database
Entry information :
Entry ID 11620
Creation 2013-01-11 (Marcel Zamocky)
Last sequence changes 2013-04-24 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-04-24 (Christophe Dunand)
Peroxidase information
Name GprAPx-CcP01
Class Hybrid Ascorbate-Cytochrome C peroxidase    [Orthogroup: APx-CcP001]
Taxonomy Fungi/Metazoa; Fungi; Chytridiomycota External Link
Organism Gonapodya prolifera    [TaxId: 1123529]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GprAPx-CcP01
start..stop
S start..stop
GprAPx-CcP02 464 1e-162 9..469 28..385
CuniAPx-CcP02 339 6e-112 27..469 19..448
BfuAPx-CcP02 336 2e-110 18..468 5..446
MbruAPx-CcP1 332 4e-109 9..449 4..432
Literature and cross-references
Literature
DNA ref. JGI genome: scaffold 72 (131243..132797)
Cluster/Prediction ref. JGI gene: 72910 [Incorrect prediction]
Protein sequence
Sequence Properties
first value : protein
second value (mature protein)
Length (aa) %sProtein length in amino acid 473 (444)
PWM (Da) %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
49516.65 (46505.0) Transmb domain %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i13-35o
PI (pH) %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
5.21 (4.94) Peptide Signal %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 30 range:30-473
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRVFRPSWTA ASLAIAVSSI TTTLAPVLAA GPIWPSPHDA IETHFYQMTG LFRTGIIDGV SPCAFSSSGN GRVAAAEWVR TAFHDMATHD VQAGTGGLDG SLLFEMERGE NGGDAFNATF  KFFRNFYSYK SSLADVIALG FVTSIGSCGG GSLPLRVGRV DATVAGPEGV PKPDDPLDVM TQKFARAGFT EPAHFITLVA CGHTLGGVHG EDFPTLVPPS AGIPNNFSHF DTTAAVFDSR  VVTEYVNGTT SSPLVVGPDP SLRSDLRLFS SDKNATVTSL GALSAEDFKA KCAAVFSKML DTVPAGVQLS EPLQPYELRP IKPLFGVFNS THLAFSTNLR IRQKGRGTIA AVTARFAGLN  GTCPSIESGG CEVEATPQRF AGGVGTGGSP MEVFEYWTAS VTYSANISIT SFLTTLTFAD NTTEVLNNGG LGYPISDAVI VDNTLSCIKP VNASNTSGEW LVTVFASVSC SSF 

Retrieve as FASTA  
Remarks Complete sequence from genomic (2 introns). Incorrect prediction from JGI (fusion of two tandem APx-CCP).
DNA +
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCGCGTAT TCCGGCCTTC GTGGACTGCC GCCTCACTGG CGATTGCGGT GTCGTCGATC ACGACCACTC TAGCACCCGT TCTCGCCGCT GGTCCAATAT GGCCATCGCC TCACGACGCG  ATCGAAACCC ACTTCTACCA GATGACGGGC CTTTTCCGCA CCGGTATCAT CGACGGCGTC TCTCCGTGCG CCTTCAGCTC CTCGGGAAAC GGCCGCGTCG CAGCCGCTGA ATGGGTTCGC  ACCGCGTTCC ACGATATGGC GACTCACGAC GTGCAGGCGG GCACGGGGGG GCTCGATGGA TCCCTTCTCT TCGAGATGGA AAGGGGCGAA AATGGGGGGG ACGCTTTCAA CGCGACTTTC  AAGTTCTTCC GCAACTTCTA CTCCTACAAA TCTTCTCTCG CCGACGTCAT CGCTTTGGGT TTTGTCACTT CAATTGGCTC TTGTGGGGGA GGTTCTCTCC CTCTCCGGGT TGGCCGCGTG  GACGCCACTG TGGCAGGGCC AGAAGGAGTT CCGAAGCCAG ACGATCCTCT GGACGTGATG ACCCAGAAGT TTGCTCGAGC AGGATTTACG GAACCGGCGC ACTTTATCAC CTTGGTCGCC  TGTGGGCACA CCCTCGGCGG CGTCCACGGC GAAGACTTTC CGACACTCGT TCCACCCTCT GCCGGGATCC CGAATAACTT TTCACACTTC GACACGACTG CTGCTGTCTT TGACAGTCGC  GTGGTAACCG AGTATGTGAA CGGGACAACT TCAAGCCCAC TGGTTGTTGG ACCGGACCCT TCATTGCGAT CCGACCTTCG ACTGTTCTCG TCTGACAAGA ACGCAACCGT GACCTCCCTC  GGGGCACTTT CGGCGGAAGA TTTCAAGGCG AAGTGCGCCG CAGTGTTTTC GAAGATGCTT GACACCGTTC CAGCAGGGGT GCAGTGCGTG ATTGTTGCTC GTCTTCCTGA TCTACTATGT  GTCCAAACTC ACACGAATTC ATTACAGACT TTCTGAGCCT CTCCAGCCGT ACGAGCTCCG CCCCATAAAG CCGCTCTTCG GCGTCTTCAA CTCCACTCAC CTTGCCTTCT CCACGAACTT  GAGGATTCGC CAAAAGGGAC GCGGTACAAT CGCAGCAGTG ACAGCTCGTT TCGCTGGCTT AAATGGAACG TGCCCCAGTA TCGAATCCGG AGGATGTGAG GTGGAGGCCA CGCCGCAAAG  GTTTGCCGGT GGTGTCGGCA CAGGTGGATC ACCAATGGAA GTATTTGAGG TGAGTGTACT TGGTGTGCAA TATGCGACGC AACGTCACCT GACCTCACAC AAACTCTGCT CAAATCAGTA  CTGGACTGCA TCTGTCACCT ATAGCGCCAA TATTTCGATC ACTTCGTTCC TGACCACCTT GACTTTCGCC GATAACACGA CTGAAGTACT CAACAATGGG GGATTAGGAT ATCCTATTAG  CGATGCAGTT ATTGTGGACA ACACGCTGAG CTGCATAAAA CCAGTCAACG CATCGAACAC GAGTGGGGAA TGGCTCGTGA CAGTTTTTGC TTCTGTGAGT TGCTCCTCAT TTTGA 
Retrieve as FASTA  
 

<< Back