The peroxidase database
Entry information :
Entry ID 13704
Creation 2016-05-13 (Christophe Dunand)
Last sequence changes 2016-05-13 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-26 (Christophe Dunand)
Peroxidase information
Name (synonym) AtSTC05 (AT2G31050/AtSTC5)
Class Stellacyanin    [Orthogroup: N/D]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis External Link
Organism Arabidopsis thaliana    [TaxId: 3702]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtSTC05
start..stop
S start..stop
AtSTC03 269 5e-93 1..199 1..201
AtSTC02 122 2e-35 28..129 23..126
HaSTC02 115 5e-33 3..154 1..162
HaSTC12 115 5e-33 28..146 27..144
Literature and cross-references
Literature
Omic ref. AtProteome: At2g31050 ATTED-II: At2g31050 e-FP Browser: At2g31050 TAIR: At2g31050
Protein sequence
Sequence Properties
first value : protein
second value (mature protein)
Length (aa) %sProtein length in amino acid 201 (175)
PWM (Da) %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
21460.84 (18755.3) Transmb domain %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i7-29o
PI (pH) %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
6.29 (6.05) Peptide Signal %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 26 range:26-200
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MALIKSNAFF TSLLILVALF GISVGGTVHK VGDSDGWTIM SVNYETWAST ITFQVGDSLV FKYNKDFHDV TEVTHNDYEM CEPSKPLARY ETGSDIVILT KPGLQHFICG FPGHCDMGQK  LQIHVLPASL GPVAAPVPGP VRPPSSFSSP SQSPLAESPV NHAPVQYQMG PSPAPHSAAS NSNVWIGLCF LPLLSLLILV * 

Retrieve as FASTA  
Remarks
DNA +
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTTGA TCAAAAGCAA CGCCTTCTTT ACTTCTTTGC TTATTCTTGT AGCACTTTTT GGAATTTCCG TTGGAGGAAC CGTTCACAAA GTTGGTGACT CCGACGGATG GACGATTATG  AGCGTCAACT ACGAGACATG GGCATCTACA ATAACTTTTC AAGTTGGAGA CTCTTTGGTC TTCAAATACA ACAAAGACTT CCACGACGTC ACCGAAGTCA CTCACAATGA TTACGAGATG  TGTGAACCGT CCAAACCGCT AGCAAGATAC GAGACCGGGT CTGATATCGT CATTCTAACC AAACCGGGAC TCCAACACTT CATATGCGGA TTTCCTGGTC ACTGTGACAT GGGACAAAAG  CTTCAAATCC ATGTATTACC AGCCTCATTG GGACCTGTCG CTGCTCCGGT TCCTGGACCC GTCCGACCAC CAAGCTCTTT TTCGTCTCCT TCACAGTCTC CGTTGGCTGA GTCACCGGTT  AATCATGCTC CAGTACAGTA TCAGATGGGA CCATCACCAG CTCCACATAG TGCAGCTTCA AACTCTAATG TTTGGATTGG ACTCTGCTTC CTTCCTTTAC TTTCTTTGCT CATCTTAGTT  TGA 
Retrieve as FASTA  
CDS +
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
Retrieve as FASTA  
 

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