The peroxidase database
Entry information :
Entry ID 14053
Creation 2016-10-26 (Christophe Dunand)
Last sequence changes 2016-10-26 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-10-26 (Christophe Dunand)
Peroxidase information
Name (synonym) AtSTC03 (AT2G26720/AtSTC3)
Class Stellacyanin    [Orthogroup: N/D]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis External Link
Organism Arabidopsis thaliana    [TaxId: 3702]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtSTC03
start..stop
S start..stop
AtSTC05 266 3e-92 1..184 1..185
AtSTC02 122 1e-35 26..129 21..126
AtUCC01 121 2e-34 14..153 12..146
HaSTC02 117 2e-33 3..158 1..162
Literature and cross-references
Literature
Omic ref. AtProteome: At2g26720 ATTED-II: At2g26720 e-FP Browser: At2g26720 TAIR: At2g26720
Protein sequence
Sequence Properties
first value : protein
second value (mature protein)
Length (aa) %sProtein length in amino acid 207 (181)
PWM (Da) %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
22369.33 (19560.7) Transmb domain %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i7-29o183-205i (i158-180o)
PI (pH) %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
7.61 (7.23) Peptide Signal %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 26 range:26-206
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MALIKNNIFF TSLLIFVTLF GVAVGGTVHK VGNTKGWTMI GGDYEAWASS RVFQVGDTLV FAYNKDYHDV TEVTHNDFEM CESSKPLRRY KTGSDSISLT KPGLQHFICG VPGHCKKGQK  LQIHVLPASL GHVAVPVPGP VRSQSSSSSP SPSPLVDPPV NNAPQYQMGP TPASHSAASA DFIFTFSFDL TLIDLCTFFI LFFILV* 

Retrieve as FASTA  
Remarks
DNA +
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTTGA TTAAGAACAA CATCTTTTTC ACTTCTTTGC TGATTTTTGT GACTCTTTTT GGAGTTGCCG TTGGAGGAAC CGTTCACAAA GTCGGCAACA CGAAAGGATG GACGATGATT  GGAGGCGATT ATGAGGCTTG GGCTTCTTCA AGAGTTTTTC AAGTCGGAGA CACTCTGGTC TTCGCATACA ACAAAGATTA CCACGACGTC ACGGAAGTCA CTCACAATGA TTTCGAGATG  TGTGAATCGT CTAAACCGCT AAGGAGATAC AAGACCGGGT CTGACTCAAT CAGTCTAACC AAACCGGGAC TCCAACACTT CATATGCGGA GTTCCTGGAC ACTGCAAGAA GGGACAAAAG  CTTCAAATCC ATGTCTTACC GGCCTCATTG GGTCACGTCG CTGTTCCGGT TCCTGGACCG GTCCGATCAC AAAGCTCTTC TTCGTCTCCT TCACCGTCCC CATTGGTTGA TCCACCCGTT  AATAATGCTC CACAGTATCA GATGGGACCA ACACCAGCTT CACATAGCGC AGCTTCAGCA GACTTTATCT TTACTTTCTC TTTTGATCTT ACTTTGATAG ATTTATGCAC ATTTTTTATT  TTATTTTTTA TCTTAGTTTG A 
Retrieve as FASTA  
CDS +
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
Retrieve as FASTA  
 

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