The peroxidase database
Entry information :
Entry ID 15
Creation 2006-06-15 (Christophe Dunand)
Last sequence changes 2006-06-15
Sequence status complete
Reviewer reviewer name not stored
Last annotation changes 2010-02-18 (Christophe Dunand)
Peroxidase information
Name (synonym) NtPrx06-1A (TOBCPI38KA / NtPrx06a)
Class Class III peroxidase    [Orthogroup: Prx013]
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Nicotiana External Link
Organism Nicotiana tabacum    [TaxId: 4097]
Cellular localisation N/D
Tissue type Cell culture
Inducer Hormon treatment
Repressor N/D
Best BLASTp hits
Perox score E-value NtPrx06-1A
start..stop
S start..stop
NtPrx06-1B 637 0 1..329 1..331
StPrx53 550 0 1..329 1..329
LePrx64 547 0 7..329 5..328
EgrPrx126 480 2e-172 31..329 29..326
Literature and cross-references
Literature Matsumoto,S., Narita,H., Ikura,K. and Sasaki,R.Nucleotide sequence of cationic peroxidases (Accession No.D42065,D42064) abundantly secreted by cultured tobacco cells Plant Physiol. 110, 713-714 (1996)
Protein ref. UniProtKB: Q40486
EST ref. GenBank: FS403271.1 [5' end] BP533869.1 [3' end]
Cluster/Prediction ref. UniGene: Nta.7230
Protein sequence
Sequence Properties
first value : protein
second value (mature protein)
Length (aa) %sProtein length in amino acid 329 (305)
PWM (Da) %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
35914.32 (33366.9) Transmb domain %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i7-29o
PI (pH) %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
8.64 (8.56) Peptide Signal %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 25 range:25-329
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRTAQLLLLS FLVFLSIVVC GVSGAGNNVP RKNFYKNTRC PNAEQFVRDI TWSKAKNDAT LSAKLLRLHY HDCFVRGCDA SILLDKVGTD QSEKEARPNL SLGGFDVIDD IKRQVEEKCP  EIVSCADILA LAARDAVSFP FKKSLWDVAT GRKDGNVSFG SEVNGNLPSP FSDFATLQQL FAKKGLNVND LVALSGAHTI GVAHCGAFSR RLFNFTGKGD MDPSLNPTYV ESLKQLCPNP  ANPATTVEMD PQSSTSFDSN YFNILTQNKG LFQSDAVLLT DKKSAKVVKQ LQKTNTFFSE FAKSMQKMGA IEVLTGNAGE IRKSCRVRN 

Retrieve as FASTA  
Remarks Complete sequence from 4 ESTs (FS373252.1, FS429416.1). Cationic peroxidase.
cDNA +
Send to BLAST
CTTAATTCTA ATTAGGTTTA AGTCCTTTGA CATTATTGTC TTGTTTTCAT TTCCTAGCAA GGAATAAAAA GAAAATGAGA ACTGCTCAAT TACTGCTACT AAGTTTTCTT GTTTTTCTTT  CTATTGTTGT TTGTGGAGTT TCGGGTGCAG GAAATAATGT GCCACGCAAG AATTTCTACA AGAACACTCG TTGTCCAAAT GCTGAACAAT TTGTTAGAGA TATCACTTGG AGCAAAGCTA  AGAATGACGC TACTTTGAGT GCTAAATTGC TTCGACTCCA CTACCATGAT TGTTTCGTTA GGGGATGTGA TGCATCGATA TTGCTGGATA AAGTTGGAAC AGATCAATCT GAGAAGGAGG  CCAGGCCAAA CCTCTCGTTG GGTGGTTTCG ATGTAATTGA TGATATCAAG CGACAAGTTG AGGAAAAATG TCCTGAGATT GTTTCTTGTG CTGACATTTT AGCATTAGCT GCTCGTGATG  CTGTTTCTTT TCCTTTTAAG AAATCGCTAT GGGATGTGGC GACCGGAAGA AAAGATGGGA ATGTTTCCTT TGGGAGTGAA GTGAACGGAA ACTTACCTTC ACCATTCTCA GATTTTGCCA  CCCTTCAGCA ACTCTTTGCA AAGAAAGGAC TAAATGTCAA TGATCTTGTT GCATTATCAG GTGCTCACAC AATTGGTGTT GCTCATTGTG GAGCTTTCTC TAGAAGACTC TTCAATTTCA  CAGGCAAAGG TGACATGGAT CCATCTTTAA ATCCTACTTA TGTTGAATCT TTGAAACAAT TGTGCCCTAA TCCAGCAAAC CCAGCCACTA CTGTGGAAAT GGACCCTCAG AGCTCAACTT  CATTTGACAG CAATTATTTC AACATCCTTA CTCAGAACAA AGGGTTGTTC CAATCTGATG CAGTCCTCCT CACAGACAAA AAATCAGCTA AAGTTGTGAA ACAGCTGCAA AAAACTAATA  CCTTTTTTTC TGAGTTTGCT AAATCCATGC AGAAAATGGG AGCCATTGAA GTTCTTACTG GAAATGCTGG AGAAATCAGG AAGAGTTGCC GCGTCAGAAA CTAATTCTGA AAACCTATGA  TTAATTTTAT GTCATATATG TAATCTCAAA AGTGTACAAC ATCTGGTATT TAATTTGTGT CTATTTGTTT CTTTTCCTTT TTGAAAGTGA TGTGTTATTT GGGTTGGAAT ACGTGCTTCA  ATAAATTTGA AATAATGTAT CTGAGCGGCC GCGA 
Retrieve as FASTA  
 

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