The peroxidase database
Entry information :
Entry ID 1955
Creation 2007-02-02 (Christophe Dunand)
Last sequence changes 2007-02-02
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2008-08-18 (Christophe Dunand)
Peroxidase information
Name GhAPx01
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Malvaceae Gossypium External Link
Organism Gossypium hirsutum (upland cotton)    [TaxId: 3635]
Cellular localisation Peroxisomal
Tissue type Boll fibers (cotton)
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GhAPx01
start..stop
S start..stop
CsAPx03 512 0 1..288 1..287
CclAPx03 511 0 1..288 1..287
BnAPx03-1Aa_other 510 0 1..288 1..287
CsaAPx02 510 0 1..288 1..286
Literature and cross-references
Literature Bunkelmann,J.R. and Trelease,R.N. (1996) Ascorbate peroxidase. A prominent membrane protein in oilseed glyoxysomes. Plant Physiol. 110 (2), 589-598.
Protein ref. UniProtKB: Q39780
mRNA ref. GenBank: GHU37060
Cluster/Prediction ref. TGI: TC37310
Protein sequence
Sequence Properties
first value : protein
second value (mature protein)
Length (aa) %sProtein length in amino acid288
PWM (Da) %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
31794.38 Transmb domain %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
o259-281i
PI (ph)%sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
6.88
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAFPVVDTEY LKEIDKARRD LRALIALKNC APIMLRLAWH DAGTYDVSTK TGGPNGSIRN EEEFTHGANS GLKIAIDFCE EVKAKHPKIT YADLYQLAGV VAVEVTGGPT IDFVPGRKDS  NICPREGRLP DAKRGAPHLR DIFYRMGLSD KDIVALSGGH TLGRAHPERS GFDGPWTNEP LKFDNSYFLE LLKGESEGLL KLPTDKALLD DPEFRKYVEL YAKDEDAFFR DYAESHKKLS  ELGFTPTSAR SKVMVKDSTV LAQGAVGVAV AAAVVILSYF YEVRKRMK 

Retrieve as FASTA  
Remarks Complete sequence from 22 ESTs and 1 cDNA. Cultivar="Deltapine 62".
 

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