Entry information : |
Entry ID |
1955 |
Creation |
2007-02-02 (Christophe Dunand) |
Last sequence changes |
2007-02-02 |
Sequence status |
complete |
Reviewer |
Christophe Dunand |
Last annotation changes |
2008-08-18 (Christophe Dunand) |
Peroxidase information |
Name |
GhAPx01 |
Class |
Ascorbate peroxidase
[Orthogroup: APx003] |
Taxonomy |
Eukaryota Viridiplantae Streptophyta Malvaceae Gossypium  |
Organism |
Gossypium hirsutum (upland cotton)
[TaxId: 3635] |
Cellular localisation |
Peroxisomal
|
Tissue type |
Boll fibers (cotton)
|
Inducer |
N/D
|
Repressor |
N/D
|
Best BLASTp hits |
|
Literature and cross-references |
Literature |
Bunkelmann,J.R. and Trelease,R.N. (1996) Ascorbate peroxidase. A prominent membrane protein in oilseed glyoxysomes. Plant Physiol. 110 (2), 589-598.
|
Protein ref. |
UniProtKB: Q39780 |
mRNA ref. |
GenBank: GHU37060 |
Cluster/Prediction ref. |
TGI: TC37310 |
Protein sequence |
Sequence Properties first value : protein
second value (mature protein) |
Length (aa) | Protein length in amino acid | 288 |
PWM (Da) | Molecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses of amino acids in the protein
and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da). | 31794.38 |
Transmb domain | Transmembrane domain Calculation done with TMHMM
The topology is given as the position of the transmembrane helices separated by i
if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc. | o259-281i |
PI (ph) | Iso electric point of protein Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information | 6.88 |
|
Sequence
Send to BLAST
Send to Peroxiscan
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MAFPVVDTEY LKEIDKARRD LRALIALKNC APIMLRLAWH DAGTYDVSTK TGGPNGSIRN EEEFTHGANS GLKIAIDFCE EVKAKHPKIT YADLYQLAGV VAVEVTGGPT IDFVPGRKDS
NICPREGRLP DAKRGAPHLR DIFYRMGLSD KDIVALSGGH TLGRAHPERS GFDGPWTNEP LKFDNSYFLE LLKGESEGLL KLPTDKALLD DPEFRKYVEL YAKDEDAFFR DYAESHKKLS
ELGFTPTSAR SKVMVKDSTV LAQGAVGVAV AAAVVILSYF YEVRKRMK
|
Retrieve as FASTA |
|
Remarks | Complete sequence from 22 ESTs and 1 cDNA. Cultivar="Deltapine 62". |