The peroxidase database
Entry information :
Entry ID 228
Creation 2006-02-10 (Filippo Passardi)
Last sequence changes 2015-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Harold Duruflé
Last annotation changes 2016-06-29 (Harold Duruflé)
Peroxidase information
Name (synonym) AtPrx62 (At5g39580 / PER62 / AtperoxP62 / ATP24a / AtP24)
Class Class III peroxidase    [Orthogroup: Prx005]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis External Link
Organism Arabidopsis thaliana    [TaxId: 3702]
Cellular localisation N/D
Tissue types Hypocotyls
Mixed tissues
Roots
Whole seedlings
Inducers Hormon treatment
Stress treatment
Wounding
Repressor N/D
Best BLASTp hits
Perox score E-value AtPrx62
start..stop
S start..stop
AlyPrx62 603 0 1..319 1..318
BstrPrx31 574 0 1..319 1..318
CagraPrx25 570 0 1..319 1..318
AalpPrx62 561 0 1..319 1..318
Gene structure Fichier Exons +
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 15848638..15849027 390 N° 2 15848010..15848172 163 N° 3 15847281..15847687 407  
complement(join(15847281..15847687,15848010..15848172,15848638..15849027))


exon

Literature and cross-references
Literature
Protein ref. UniProtKB: Q9FKA4
DNA ref. Phytozome 11: Chr5 (15849027..15847281)
mRNA ref. GenBank: NM_123320
Cluster/Prediction ref. Genebank: 833954 Phytozome Gene 11: 19670482 UniGene: At.22396
Omic ref. AtProteome: At5g39580 ATTED-II: At5g39580 e-FP Browser: At5g39580 Genevestigator: At5g39580 RnR: At5g39580 TAIR: At5g39580
Protein sequence
Sequence Properties
first value : protein
second value (mature protein)
Length (aa) %sProtein length in amino acid 319 (297)
PWM (Da) %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
33998.01 (31645.7) Transmb domain %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i7-24o
PI (pH) %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
8.5 (8.42) Peptide Signal %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 23 range:23-319
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGLVRSFALVIVFLSCLIAVYGQGTRIGFYSTTCPNAETIVRTTVASHFGSDPKVAPGLLRMHNHDCFVQGCDGSVLLSGPNSERTAGANVNLHGFEVIDDAKRQLEAACPGVVSCADILALAARDSVSLTNGQSWQVPTGRRDGRVSLASNVNNLPSPSDSLAIQQRKFSAFRLNTRDLVTLVGGGHTIGTAACGFITNRIFNSSGNTADPTMDQTFVPQLQRLCPQNGDGSARVDLDTGSGNTFDTSYFINLSRNRGILQSDHVLWTSPATRSIVQEFMAPRGNFNVQFARSMVKMSNIGVKTGTNGEIRRVCSAVN


Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, introns 2 and 3), 5 cDNA and 35 ESTs.
Promoter +
Send to BLAST
Send to cis Analysis
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATATTATATA TTTAGGTTCC ATACACTGTC TAATTAATCA TTGTCTTATT TGAGTTTGGT CATATTTGGA TACGGTGCTA TTGAGTTTGG TCATATTTGG ATACGGTGCT ATTGAGTTTG  TATCATTAGT TTTGTTCATA TTTGGACTTC ACCCATTTAG ATCTGAACAG CTCAATTAAC ATCTTTAGAT AGATGTGCTC AACAGAAAAA TTGAGATTAT GCAATTTAGT GTTTAGGGTT  TAGGGGTTAG GGGTTAGAGA AAAATTATTT CCAATTCAAA TATCATTTGC GGGGAAATCT CAGACTATTT TCATGCAAAA TATATAGAGG CTAATTTGAA GAGGGTGCTT GTAACAAGAC  CCAGAGAAGG ATTTTAGCAA CTCATGGGCA ATTAATGTTG TCCGTATGTA CAAATAAAAA CCCAATGGAC CGACTTCAAG GTCGCAGCAT GCCAGCATCC AAACTCGTTC AGGTTATCTA  GCTTTACATT TGAAGCAAAG ACGATCACTT GCGTTACGAT TAGTTAGAAT ATGGTTTTGG TACCATAAAA ACAAGATTTA TATATAGACC ATAAGGGTTT TTACTTTTTT TTTCTTTTAA  GCTTCGACGC CAATATATAC ATATGTGTAG AGACCAAAAT TTGGTCGATG AATATACATC AACGACGACA AGATATAATA TATGATAATC TTCAATTTTT GAATTTTTCT AGTCTTTGTT  AACGTCATGC ATGGATTTTT ATAGGAAAAT AACATCTATA TTGACAAAAA TTATTTTAAG AAACAGGAAT TCATAGAAAA CTCTTCTTTT TAAAACATCT GACTTTATTA TATCCTAAAG  GGACAAGTAG AAAACTCTTT ATTTGTTATA TGTCACTATT CTGTTACAAA TTTTTATTGT TTCAAATAAA AATTAATTGC AGAAAAAATT CCTATGGACC AACAACGATG GTTAGTCTTA  GTCAGCATGA GTTCTGGCTA TTGATCAGTG ATCACCACCA ATCAACGTGT CGCCATTAGT CATTAATCTG TTATGAAAGT AAACGTATAG AATTAATCTT TATCATCACA ACATCATTCT  ATATAGCAAA CCTGGTGCGG GTAGAACCCG ATCTTTATCC GAAATATATA TCTTTACCAA AAAATCGAAC TGAAAAATTC GACATCATTC TTCCATTTCC AGATTACTAA AATTCGAACA  AAACAAACCG AACCAGTCAA AGAAACAAAG CTTAATTATT AAGAAAACCC ACTATACTAT TTTGTTATTT GTTTGTTTGT TAAAGACTAT ACTATCTATA TGTTCCGGTC AATACACTAA  TCTCTCACGA TGGATCGGTC CGTGGACTTT TGTTGAATAG TGATGTCCGT GGACTTTTGT TGAATAGTGA TTAGTGAATG TTCATGTTTT GGATATTTTA ACACTTTTGT GAGACGGTCA  GTGAACTTTT GTTGAATAGT GGATGTTCAT GTTTTGGATA TTTTAACACT TTTTCTTTTC CTAAAGTATT TTAACACTTA TTCGATTAAC CAGTCCAAAG TCGGTGCATT GTAGATGAAA  ATATCATGCA CTAATACGAG TTTCCTTAAT AAAGAATTAG AGTTGAATCA AAGTTTAACG CCTGCTAAAA CAATATTCTA TAATCACATT CATTATAAAT GATTACACAC TATTAATTAG  GAATTAGTTT GATAGAAACG AACAAAAGAG AAAAAACAAA CCCAACATGA TCTGCAATCG TCAACGCGCG AAGCCAGCTC ATGACCAATC ACATAACGCG GTTTTCAGTT TTGAATTGGA  TTACAACGTC GTCGTTTTGT CAAATTACCT CAACACTCTA GCCCCTTTCG CTGACTTCAA CATCACCATT TGACTTCTCA ATCCCTCTAT AAGTTACTCA CGTTCTCGTA TCACTTTCCA  TGCATCTAAA ACAAACTCTA TCTACTAACT CGAAACACAC TTGCGGTCTT ATCTAAAACA CAAACCAACA AAAAGAAAAA 
Retrieve as FASTA  
Terminator +
Send to BLAST
Send to cis Analysis
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCAGTGATTA AGTTTTTATG GCTAAAAAAA AGTGTTTATG GCTAACTCTT GTTCAAGGGC ATTTTTTTTA TAGTTTGATT TAAATTTAAA CCCAATAGAA TAGAAAGGAT ATGAGAGAAA  CCCAAAAGTG GGTTGCTGAT AAATGTATTT CATTTCTTTC GGTTTGACTT GGTGGAATAA ATAAAGTTCA ATTTCGTTAC ATGAATAGAA TTGGTGTTTT ATTAATCGCC AACCTTCCGT  GGAATACTAA TTATCACCTT GATCCAATTG ATCATTCGAA TCAAAGAAGC TTCAACAATG TGAAAGTATA ACTGAGAGAA GAGTGTCTTA ATCAGTGAGT TCAACCTACC AGTTTGATAA  GCCTACATTT CACCTATCGG CCCGAAACAC CCTAACACGG AGTACTAGGT CGAGATGTTT CCGTCAGCCT TCCTCAAAAG ACTGTTCTCT TGATACTGAT TTATACATAC ATAAATCATT  GTAACACTAC ACTAATCCAA TACCAGGTAT GGCCGAGCAC GATCGATCTT CCCTAGACTG AACAAGATCA ACCCTCACTT GTTTGAGCAT GACCAACCAT TCTTCACCAA ATTCAAATTG  TATTTAATTT AAACGGTTCG GTATCACAAA CCAACCATTG GAATGTAAAC ACCACCGTCG AATACAAAGA TTGCCGAGTC GCAACCCTTA GAGTTTCGGC TAGCCTGATC AAAGCGTGGA  TGAGCCTCTG CTCGGTGTCC TGAAAATCCT GCATGAGAAC CAGGTTTGTC TCTTTCTCTC TTCTTCTTAC GGTCTTTCTT TCACTGGATA GAGTTTTTGA ATTCGTATGT GAGAACTAAA  AGGCATATAG AAAACCTTAT CAGGCGTGAC CATCTCACAC TATTGGGCTT GTTTTGTGTG GGAGACTAAT GTGCCGCGCT GTATTCATAT GATCCACAAA ATTAAGGTTT ATATTTGGTT  CATGAAGTCT TAGTTACATA TATCAGTCTT CCTAACTTAG 
Retrieve as FASTA  
DNA +
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCTTGGTCCGATCATTTGCTTTGGTCATAGTCTTCCTTAGTTGTCTCATCGCCGTTTATGGCCAAGGTACGAGGATCGGGTTCTACTCGACTACGTGCCCTAATGCCGAGACAATT
GTTCGGACCACTGTGGCATCTCACTTTGGTTCAGATCCAAAGGTTGCACCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGATGGTTCGGTGCTTTTATCGGGA
CCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCTCCATGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGTTGTCTCTTGTGCTGATATCTTG
GCCTTAGCGGCTCGTGATTCGGTTTCTCTC
GTAAGTTTATATATATACTAATTATACAACAATCAATATATCATATATAAGCAAAGAACTATGTCTTGATTGTTTTAAATGCCAATATTT
TGTGTTTGTATTTAGATATGAGTAAGTAAAGAGGATTAACAAAGGCAACACAATTTTTTGTTTTATATTAACTAATTTTACAAGGTATATATACGCCAAAATACAAAGATTACGTTTCTT
CATTTCTTTGGTTTTGTGTTTACAAACTAAACGTTGATACTTAAGAACTTACATAACATATATTTGAAAAAAATATAGATTTTATAATATTATATTTTCAAACAATTATGTGTAACATTT
ATGTTTGTTTTACTTGGTTTCTTCTATAATATTAACTTAGTATTGGTTACAAAGAAAGTAAAAACAAAAATAATGTACAAGCGGACAGAGAGTAATTAACGTTTGTTTGGCTTTAATTTG
CATGGGTGTATGTAGACAAACGGACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGTTAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATT
CAACAAAGGAAATTCTCCGCTTTTCGCCTCAACACTCGCGATCTCGTCACTCTTGTTG
GTATGTAACCTATATATCACCGTTTAGAAATCAGAATAGATCCAATACATTAGTTTGGATGG
AAACTCCTCGTACGTGTTTTTTTCTTTCATATTTTGAATATTCACTTTAATAGTTAGTGTTGTGCACTGCATGGTTTATTGTCACTCGTACTTAATTTGCATAAGAATAAGGATAACTCT
AGGATCAGGTTCATGTTTAAACCAAACATTTTCGTATTTTTCAAAGAAAATTAAGTTTTATTTCGGTGTACATATTACATATATATATTTTTCAATTATATTGTTAATCAAACTGAAGAT
GAACCTATATGAATTAATAGGAGGAGGACACACGATCGGAACAGCTGCATGTGGGTTTATCACGAACAGGATATTCAACTCGAGCGGAAACACAGCAGATCCAACAATGGACCAAACATT
TGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATCAGCACGTGTTGATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCAATCTCAGCCGTAACAG
AGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCACAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAAGGTCAATGGTTAAAAT
GAGTAATATTGGTGTGAAGACGGGGACAAATGGAGAAATTCGTAGGGTTTGCTCTGCGGTTAATTAA
Retrieve as FASTA  
CDS +
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCTTGGTCCGATCATTTGCTTTGGTCATAGTCTTCCTTAGTTGTCTCATCGCCGTTTATGGCCAAGGTACGAGGATCGGGTTCTACTCGACTACGTGCCCTAATGCCGAGACAATT
GTTCGGACCACTGTGGCATCTCACTTTGGTTCAGATCCAAAGGTTGCACCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGATGGTTCGGTGCTTTTATCGGGA
CCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCTCCATGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGTTGTCTCTTGTGCTGATATCTTG
GCCTTAGCGGCTCGTGATTCGGTTTCTCTC
ACAAACGGACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGTTAACAATCTTCCTTCTCCAAGT
GACTCTCTAGCCATTCAACAAAGGAAATTCTCCGCTTTTCGCCTCAACACTCGCGATCTCGTCACTCTTGTTG
GAGGAGGACACACGATCGGAACAGCTGCATGTGGGTTTATCACGAAC
AGGATATTCAACTCGAGCGGAAACACAGCAGATCCAACAATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATCAGCACGTGTTGATCTTGACACC
GGAAGTGGAAACACTTTTGACACATCTTATTTCATCAATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCACAAGATCCATAGTGCAAGAGTTT
ATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAAGGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGACGGGGACAAATGGAGAAATTCGTAGGGTTTGCTCTGCGGTTAATTAA
Retrieve as FASTA  
cDNA +
Send to BLAST
ATGCATCTAA AACAAACTCT ATCTACTAAC TCGAAACACA CTTGCGGTCT TATCTAAAAC ACAAACCAAC AAAAAGAAAA AATGGGCTTG GTCCGATCAT TTGCTTTGGT CATAGTCTTC  CTTAGTTGTC TCATCGCCGT TTATGGCCAA GGTACGAGGA TCGGGTTCTA CTCGACTACG TGCCCTAATG CCGAGACAAT TGTTCGGACC ACTGTGGCAT CTCACTTTGG TTCAGATCCA  AAGGTTGCAC CCGGGTTACT GAGAATGCAC AACCATGATT GCTTTGTCCA AGGTTGTGAT GGTTCGGTGC TTTTATCGGG ACCTAACTCT GAAAGAACCG CTGGCGCAAA CGTTAACCTC  CATGGTTTTG AGGTCATTGA CGATGCCAAG AGGCAGCTCG AGGCAGCATG TCCTGGTGTT GTCTCTTGTG CTGATATCTT GGCCTTAGCG GCTCGTGATT CGGTTTCTCT CACAAACGGA  CAAAGTTGGC AAGTTCCAAC AGGACGTAGA GATGGAAGAG TTTCCTTGGC ATCGAACGTT AACAATCTTC CTTCTCCAAG TGACTCTCTA GCCATTCAAC AAAGGAAATT CTCCGCTTTT  CGCCTCAACA CTCGCGATCT CGTCACTCTT GTTGGAGGAG GACACACGAT CGGAACAGCT GCATGTGGGT TTATCACGAA CAGGATATTC AACTCGAGCG GAAACACAGC AGATCCAACA  ATGGACCAAA CATTTGTACC ACAACTTCAA AGACTTTGTC CCCAAAACGG CGACGGATCA GCACGTGTTG ATCTTGACAC CGGAAGTGGA AACACTTTTG ACACATCTTA TTTCATCAAT  CTCAGCCGTA ACAGAGGAAT TCTTCAATCC GATCACGTTC TTTGGACTAG TCCGGCCACA AGATCCATAG TGCAAGAGTT TATGGCACCT AGAGGCAACT TCAATGTCCA GTTCGCAAGG  TCAATGGTTA AAATGAGTAA TATTGGTGTG AAGACGGGGA CAAATGGAGA AATTCGTAGG GTTTGCTCTG CGGTTAATTA ATCAGTGATT AAGTTTTTAT GGCTAAAAAA AAGTGTTTAT  GGCTAACTCT TGTTCAAGGG CATTTTTTTT ATAGTTTGAT TTAAATTTAA ACCCAATAGA ATAGAAAGGA TATGAGAGAA ACCCAAAAGT GGGTTGCTGA TAAATGTATT TCATTTCTTT  CGGTTTGACT TGGTGGAATA AATAAAGTTC AATTTCGTTA C 
Retrieve as FASTA  
 

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