The peroxidase database
Entry information :
Entry ID 2508
Creation 2006-08-10 (Nenad Bakalovic)
Last sequence changes 2011-05-09 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-05-09 (Christophe Dunand)
Peroxidase information
Name AacAPx-R
Class Ascorbate peroxidase related    [Orthogroup: N/D]
Taxonomy Eukaryota Viridiplantae Chlorophyta Ulvophyceae Polyphysaceae Acetabularia External Link
Organism Acetabularia acetabulum    [TaxId: 35845]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AacAPx-R
start..stop
S start..stop
CreAPx-R 196 4e-63 1..187 146..334
VvAPx-R 186 6e-59 1..185 144..324
GrAPx-R 185 2e-58 1..185 148..328
HaAPx-R 183 5e-58 1..185 138..318
Literature and cross-references
Literature Keeling,P.J.TBestDB[http://tbestdb.bcm.umontreal.ca/searches/login.php]. Acetabularia acetabulum.
EST ref. GenBank: EC096934.1 [3' end]
Protein sequence
Sequence Properties
first value : protein
second value (mature protein)
Length (aa) %sProtein length in amino acid185
PWM (Da) %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
20298.34
PI (ph)%sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
4.78
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
FELDRPENFG LKRGWKLIGE VQKSVEGTPL AFLLSPADII ALAGAYSVKA TGGPAIEVKI GRVAA*EADP EERIPGEDLN VE*IKQYF*R AGFTT*EMVA LSGAHTIGGK GFGNPSKFDN  TYYKTLIQKP WDDPKNEMGK MIGIPTDRLI ATDEECLTHI NTYVND*KAF FTDFRDAYVK MVNLGVTEFP 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. Several stop codons in the sequence.
cDNA +
Send to BLAST
AGTTTGAATT AGACCGTCCC GAAAATTTTG GATTAAAGAG GGGATGGAAA TTAATTGGAG AAGTTCAGAA AAGCGTGGAA GGAACGCCGC TTGCATTTTT ATTATCTCCC GCGGACATAA  TAGCGTTGGC CGGAGCTTAT AGTGTAAAAG CGACTGGAGG ACCTGCAATT GAAGTAAAGA TTGGGCGAGT GGCAGCCTAG GAAGCTGATC CTGAGGAGCG AATACCGGGA GAAGATTTAA  ATGTTGAGTA GATAAAACAA TACTTTTAAA GGGCAGGTTT TACAACATAA GAAATGGTGG CTTTGTCGGG GGCACATACG ATCGGTGGCA AAGGATTCGG AAACCCATCC AAATTCGATA  ATACGTATTA CAAAACTCTT ATCCAAAAAC CTTGGGATGA TCCAAAAAAC GAGATGGGCA AAATGATAGG TATCCCCACG GACAGGCTAA TTGCTACAGA CGAAGAATGT TTAACTCACA  TTAATACATA TGTTAATGAT TAAAAAGCAT TTTTTACAGA TTTTCGGGAT GCTTATGTTA AAATGGTAAA TTTAGGTGTC ACAGAATTCC CTTAATGATT ATGATTTTGT TTTGGATTTT  TGCCATCTAG TTCATACATA AAAAATGGTA GTATTTGTTG CAGTATGTCG ATGTTTACTT TTTACTTTTA ACCAGTGACA ACGTTGAGCG CAAAAAAAAA AAAAAAAAAA AAAAAAA 
Retrieve as FASTA  
 

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