Entry information : PsojCP03
Entry ID 10143
Creation 2012-01-18 (Christophe Dunand)
Last sequence changes 2012-01-18 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-01-18 (Christophe Dunand)
Peroxidase information: PsojCP03
Name PsojCP03
Class Catalase peroxidase    [Orthogroup: CP002]
Taxonomy Eukaryota Phytophthora
Organism Phytophthora sojae    [TaxId: 67593 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PsojCP03
start..stop
S start..stop
PcapCP02 1325 0 1..687 1..687
PraCP02 1323 0 1..687 1..687
PiCP02 1289 0 1..687 1..687
PraCP01 1191 0 1..687 1..686
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2984124..2986187 2064  
join(2984124..2986187)


exon

Literature and cross-references PsojCP03
Protein ref. UniProtKB:   G4YV11 [Incorrect prediction]
DNA ref. JGI genome:   scaffold_2 (2984124..2986187)   scaffold_2 (2981818..2980469)
Cluster/Prediction ref. JGI gene:   284780 [Incorrect prediction]
Protein sequence: PsojCP03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   687 (666)
PWM (Da):   %s   73910.98 (71925.9)  
PI (pH):   %s   4.52 (4.49) Peptide Signal:   %s   cut: 22 range:22-687
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MNVRLAAFVA ALAGLSSGAN AGSCPFGYDS VAAMHQQDRQ ISSELYDAQS CDVIDYELVK QDLLHLMTDS QDFWPADFGH YGGLFIRLAW HCNGSYRRAD GRGGCDGGRI RFNPERSWAD  NTNLDKALDL LEPIKLKYGD ALSWGDLIVL SGNVAIESMG GPVLGFCGGR RDDADGTSSL QLGPTPEQES VAPCAVDGQC KEPLGTTTMG LIYVNPEGPM GVPDPALSVH DVRDTFERMG  MNDRETVALI GGGHAFGKTH GACPTGPGPD PTQDPLNPWP GTCGEGAMKG KGNNTFTGGF EGSWTFTPTK WGNGYFKGLT NLEWEKFDGP GGHVQWRPVP DTTPPVRMLT ADIALLHDES  YHNISLEFAA NQTALDEEFS HAWYKLMSRD LGPVARCRGK DVPPAQPFQN PLPPTPASLA DFDAVRSDIR SLLTKSVDGL TSDSSSDGTP YNGALFVHAA WQCASTFRIT DYAGGCNGAR  IRFSPEKDWP VNAGVDKIIS ALEPVKESYP TLSTADLIVL AGQVALEDAG NVTIDFLGGR TDADNGNGTE ILAPREYYNT TLIAVRDNIK ILGVSPYEAV ALAGRPRSVA QQKVLGYSGS 
YSNDSLTLSN EYFQVLLNET WTEVSAKEYK AEGKDVYMMD TDLALLAAPE LKEAVQLFAS EEAVFKHVFS SAWAKVMTAD HFNASSY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron). Incorrect prediction from JGI (large 5'end is missing). 100% identical sequence found reverse downstream (duplication or mis-assembly).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACGTCC GCCTCGCCGC CTTCGTCGCC GCGCTCGCCG GCCTGTCCAG CGGCGCCAAC GCCGGCAGCT GCCCGTTCGG CTACGACTCG GTCGCCGCCA TGCACCAGCA GGACCGCCAG  ATCTCCAGCG AGCTGTACGA CGCGCAGAGC TGCGATGTGA TCGACTACGA GCTCGTGAAG CAGGACCTGC TGCACCTGAT GACGGACTCG CAGGACTTCT GGCCCGCCGA CTTCGGCCAC  TACGGCGGCC TCTTCATCCG CCTGGCGTGG CACTGCAACG GCTCGTACCG CCGCGCCGAC GGCCGCGGAG GCTGCGACGG CGGCCGCATC CGCTTCAACC CGGAGCGCAG CTGGGCCGAC  AACACCAACC TGGACAAGGC GCTCGACCTG CTGGAGCCCA TCAAGCTCAA GTACGGCGAC GCGCTGTCGT GGGGTGACCT CATCGTGCTG TCGGGCAACG TGGCCATCGA GAGCATGGGC  GGCCCCGTGC TGGGCTTCTG CGGCGGCCGC CGCGACGACG CCGACGGCAC GAGCAGCCTG CAGCTGGGCC CGACGCCCGA GCAGGAGAGC GTGGCGCCGT GCGCCGTGGA CGGCCAGTGC  AAGGAGCCGC TGGGCACCAC CACGATGGGC CTCATTTACG TGAACCCGGA GGGCCCCATG GGCGTGCCGG ACCCGGCGCT GTCGGTGCAC GACGTGCGGG ACACCTTCGA GCGCATGGGC  ATGAACGACC GCGAGACGGT GGCGCTGATC GGCGGCGGCC ACGCCTTCGG CAAGACGCAC GGTGCTTGCC CGACAGGCCC GGGCCCCGAT CCGACGCAGG ACCCGCTGAA CCCCTGGCCG  GGAACTTGCG GCGAGGGCGC CATGAAGGGA AAGGGCAACA ACACCTTCAC GGGCGGCTTC GAGGGCTCGT GGACGTTCAC GCCCACCAAG TGGGGCAACG GCTACTTCAA GGGCCTCACC  AACTTGGAGT GGGAGAAGTT CGACGGCCCG GGCGGCCACG TGCAGTGGCG CCCCGTGCCC GACACAACGC CGCCCGTGCG CATGCTCACG GCCGACATCG CGCTGCTGCA CGACGAGAGC  TACCACAACA TCTCGCTCGA GTTCGCGGCC AACCAGACCG CGCTGGACGA GGAGTTCTCG CACGCCTGGT ACAAGCTCAT GTCGCGCGAC CTGGGCCCCG TGGCTCGCTG CCGCGGCAAG  GACGTGCCGC CCGCGCAGCC GTTCCAGAAC CCGCTGCCGC CGACGCCCGC CTCGCTGGCG GACTTCGACG CCGTGCGCTC GGACATCCGC TCGCTGCTGA CCAAGTCGGT GGACGGCTTG  ACGAGCGACT CGAGCAGCGA CGGCACGCCG TACAACGGCG CGCTGTTCGT GCACGCGGCG TGGCAGTGCG CGTCGACGTT CCGCATCACC GACTACGCTG GCGGCTGCAA CGGCGCCAGG  ATCCGCTTCT CGCCGGAGAA GGACTGGCCG GTGAACGCCG GTGTGGACAA GATCATCTCG GCGCTGGAGC CCGTGAAGGA GTCGTACCCG ACGCTGTCGA CGGCCGACCT GATCGTGCTG  GCGGGCCAGG TGGCCCTCGA GGACGCCGGC AACGTGACCA TCGACTTCCT GGGTGGCCGC ACGGACGCCG ACAACGGCAA CGGCACGGAG ATCCTGGCCC CGCGCGAGTA CTACAACACG  ACGCTGATCG CCGTGCGCGA CAACATCAAG ATCCTGGGCG TGTCCCCGTA CGAGGCCGTG GCTCTGGCGG GCCGTCCGCG CAGCGTGGCG CAGCAGAAGG TGCTGGGCTA CAGCGGCTCG  TACAGCAACG ACTCACTCAC GCTGTCGAAC GAGTACTTCC AGGTGCTCCT GAACGAGACG TGGACAGAGG TGTCGGCGAA GGAGTACAAG GCGGAGGGCA AGGACGTGTA CATGATGGAC  ACGGATCTGG CTCTGCTGGC GGCGCCCGAG CTGAAGGAGG CGGTGCAGCT GTTCGCGTCC GAGGAGGCCG TCTTCAAGCA CGTGTTCTCT TCGGCGTGGG CCAAGGTCAT GACGGCCGAC 
CACTTCAACG CGAGCAGCTA CTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACGTCC GCCTCGCCGC CTTCGTCGCC GCGCTCGCCG GCCTGTCCAG CGGCGCCAAC GCCGGCAGCT GCCCGTTCGG CTACGACTCG GTCGCCGCCA TGCACCAGCA GGACCGCCAG  ATCTCCAGCG AGCTGTACGA CGCGCAGAGC TGCGATGTGA TCGACTACGA GCTCGTGAAG CAGGACCTGC TGCACCTGAT GACGGACTCG CAGGACTTCT GGCCCGCCGA CTTCGGCCAC  TACGGCGGCC TCTTCATCCG CCTGGCGTGG CACTGCAACG GCTCGTACCG CCGCGCCGAC GGCCGCGGAG GCTGCGACGG CGGCCGCATC CGCTTCAACC CGGAGCGCAG CTGGGCCGAC  AACACCAACC TGGACAAGGC GCTCGACCTG CTGGAGCCCA TCAAGCTCAA GTACGGCGAC GCGCTGTCGT GGGGTGACCT CATCGTGCTG TCGGGCAACG TGGCCATCGA GAGCATGGGC  GGCCCCGTGC TGGGCTTCTG CGGCGGCCGC CGCGACGACG CCGACGGCAC GAGCAGCCTG CAGCTGGGCC CGACGCCCGA GCAGGAGAGC GTGGCGCCGT GCGCCGTGGA CGGCCAGTGC  AAGGAGCCGC TGGGCACCAC CACGATGGGC CTCATTTACG TGAACCCGGA GGGCCCCATG GGCGTGCCGG ACCCGGCGCT GTCGGTGCAC GACGTGCGGG ACACCTTCGA GCGCATGGGC  ATGAACGACC GCGAGACGGT GGCGCTGATC GGCGGCGGCC ACGCCTTCGG CAAGACGCAC GGTGCTTGCC CGACAGGCCC GGGCCCCGAT CCGACGCAGG ACCCGCTGAA CCCCTGGCCG  GGAACTTGCG GCGAGGGCGC CATGAAGGGA AAGGGCAACA ACACCTTCAC GGGCGGCTTC GAGGGCTCGT GGACGTTCAC GCCCACCAAG TGGGGCAACG GCTACTTCAA GGGCCTCACC  AACTTGGAGT GGGAGAAGTT CGACGGCCCG GGCGGCCACG TGCAGTGGCG CCCCGTGCCC GACACAACGC CGCCCGTGCG CATGCTCACG GCCGACATCG CGCTGCTGCA CGACGAGAGC  TACCACAACA TCTCGCTCGA GTTCGCGGCC AACCAGACCG CGCTGGACGA GGAGTTCTCG CACGCCTGGT ACAAGCTCAT GTCGCGCGAC CTGGGCCCCG TGGCTCGCTG CCGCGGCAAG  GACGTGCCGC CCGCGCAGCC GTTCCAGAAC CCGCTGCCGC CGACGCCCGC CTCGCTGGCG GACTTCGACG CCGTGCGCTC GGACATCCGC TCGCTGCTGA CCAAGTCGGT GGACGGCTTG  ACGAGCGACT CGAGCAGCGA CGGCACGCCG TACAACGGCG CGCTGTTCGT GCACGCGGCG TGGCAGTGCG CGTCGACGTT CCGCATCACC GACTACGCTG GCGGCTGCAA CGGCGCCAGG  ATCCGCTTCT CGCCGGAGAA GGACTGGCCG GTGAACGCCG GTGTGGACAA GATCATCTCG GCGCTGGAGC CCGTGAAGGA GTCGTACCCG ACGCTGTCGA CGGCCGACCT GATCGTGCTG  GCGGGCCAGG TGGCCCTCGA GGACGCCGGC AACGTGACCA TCGACTTCCT GGGTGGCCGC ACGGACGCCG ACAACGGCAA CGGCACGGAG ATCCTGGCCC CGCGCGAGTA CTACAACACG  ACGCTGATCG CCGTGCGCGA CAACATCAAG ATCCTGGGCG TGTCCCCGTA CGAGGCCGTG GCTCTGGCGG GCCGTCCGCG CAGCGTGGCG CAGCAGAAGG TGCTGGGCTA CAGCGGCTCG  TACAGCAACG ACTCACTCAC GCTGTCGAAC GAGTACTTCC AGGTGCTCCT GAACGAGACG TGGACAGAGG TGTCGGCGAA GGAGTACAAG GCGGAGGGCA AGGACGTGTA CATGATGGAC  ACGGATCTGG CTCTGCTGGC GGCGCCCGAG CTGAAGGAGG CGGTGCAGCT GTTCGCGTCC GAGGAGGCCG TCTTCAAGCA CGTGTTCTCT TCGGCGTGGG CCAAGGTCAT GACGGCCGAC 
CACTTCAACG CGAGCAGCTA CTAA 

Retrieve as FASTA