Entry information : EglPrx[P]78
Entry ID 10900
Creation 2012-05-04 (Qiang Li)
Last sequence changes 2013-02-06 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-04-08 (Christophe Dunand)
Peroxidase information: EglPrx[P]78
Name EglPrx[P]78
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus globulus    [TaxId: 34317 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EglPrx[P]78
start..stop
S start..stop
EgrPrx78 144 3e-44 1..74 2..91
EgrPrx81 141 3e-43 1..74 2..91
EglPrx81 141 3e-43 1..74 2..91
EguPrx78 139 1e-42 1..74 2..91
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..73 73 N° 2 122..270 149  
join(1..73,122..270)


exon

Literature and cross-references EglPrx[P]78
Protein sequence: EglPrx[P]78
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   74 (44)
PWM (Da):   %s   8000.98 (4826.4)  
PI (pH):   %s   7.51 (6.49) Peptide Signal:   %s   cut: 31 range:31-74
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
PHLTSHSSPLTCSSTLFIALILICxHRQMSFDHYAKSCPQVEQLIGSVTSQQFKEAPVSGPATIRLFFHDCFVE

Retrieve as FASTA  
Remarks Pseudogene from NGS. Short PS with gap due to NNNN.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCCCATCTCACTTCTCATTCTTCCCCTCTAACTTGCTCATCGACCCTTTTCATCGCCCTCATCCTCATATGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCACCGCCAGATGTCGTTCGACCACTACGCCAAGTCGTGCCCCCAGGTCGAGCAACTCATCGGGTCGGTCACGAGCCAGCAGTTCAAGGAAGCGCCGGTCTCCGGGCCGGCCACCATC
CGGCTCTTCTTCCATGACTGCTTCGTTGAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CCCCATCTCACTTCTCATTCTTCCCCTCTAACTTGCTCATCGACCCTTTTCATCGCCCTCATCCTCATATGCANNCACCGCCAGATGTCGTTCGACCACTACGCCAAGTCGTGCCCCCAG
GTCGAGCAACTCATCGGGTCGGTCACGAGCCAGCAGTTCAAGGAAGCGCCGGTCTCCGGGCCGGCCACCATCCGGCTCTTCTTCCATGACTGCTTCGTTGAG

Retrieve as FASTA