Entry information : EglPrx[P]173
Entry ID 10992
Creation 2012-05-15 (Qiang Li)
Last sequence changes 2013-02-06 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-11 (Christophe Dunand)
Peroxidase information: EglPrx[P]173
Name EglPrx[P]173
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus globulus    [TaxId: 34317 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EglPrx[P]173
start..stop
S start..stop
EgrPrx[P]173 137 3e-44 1..66 56..121
EguPrx[P]173 95 1e-27 1..66 56..121
AcoPrx32 43 0.0000006 40..65 293..318
AcoPrx116 43 0.0000006 40..65 293..318
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..264 264  
join(1..264)


exon

Literature and cross-references EglPrx[P]173
Protein sequence: EglPrx[P]173
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   63
PWM (Da):   %s   6752.33  
PI (pH):   %s   8.09
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

KALLPHST*K HGPLPIRCCS F*PTSEPPHS RPSCSDFN*F FTEFAQLMWR MGAVGVLGGG VGELRI 

Retrieve as FASTA  
Remarks Pseudogene from NGS. Short PS with stops in it.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGGCACTAC TGCCCCATTC TACTTAAAAG CATGGGCCTC TTCCAATTCG ATGCTGCTCT TTTTGACCAA CAAGTGAGCC ACCACATTCG CGTCCCAGTT GCTCGGACTT CAACTAGTTC 
TTCACCGAAT TTGCACAGTT GATGTGGAGG ATGGGCGCCG TCGGAGTGCT CGGGGGCGGT GTTGGAGAAC TTAGAATA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGGCACTAC TGCCCCATTC TACTTAAAAG CATGGGCCTC TTCCAATTCG ATGCTGCTCT TTTTGACCAA CAAGTGAGCC ACCACATTCG CGTCCCAGTT GCTCGGACTT CAACTAGTTC 
TTCACCGAAT TTGCACAGTT GATGTGGAGG ATGGGCGCCG TCGGAGTGCT CGGGGGCGGT GTTGGAGAAC TTAGAATA 

Retrieve as FASTA