Entry information : EglPrx[P]190
Entry ID 11012
Creation 2012-05-16 (Qiang Li)
Last sequence changes 2013-02-06 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-13 (Christophe Dunand)
Peroxidase information: EglPrx[P]190
Name EglPrx[P]190
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus globulus    [TaxId: 34317 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EglPrx[P]190
start..stop
S start..stop
EgrPrx[P]190 186 1e-63 1..101 1..101
EguPrx[P]190 182 6e-62 1..101 1..101
EcamPrx[P]190 112 1e-34 32..90 1..59
PtPrx31 60 0.000000000003 32..90 14..76
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..303 303  
join(1..303)


exon

Literature and cross-references EglPrx[P]190
Protein sequence: EglPrx[P]190
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   100
PWM (Da):   %s   10113.06 Transmb domain:   %s   o15-37i77-99o
PI (pH):   %s   5.68
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

KKAGSTQTRG PGEEWPVYTF IGSGTTFAFL ALILYPATDA PDAAGLSYDQ TCPNDxxxxx xVACWKILKA PNTPAGVLRI FFHDCFVWAC VVYIPFS*IV L 

Retrieve as FASTA  
Remarks Pseudogene from NGS. Short PS with stop in frame.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGAAAGCTG GCTCTACTCA GACGAGAGGA CCGGGAGAAG AATGGCCAGT TTATACATTT ATCGGATCTG GAACGACCTT TGCGTTCCTG GCCTTGATCC TGTATCCCGC CACGGATGCA  CCTGATGCAG CGGGCCTCAG CTACGATCAG ACTTGCCCGA ATGATnnnnn nnnnnnnnnn nGCGTGGCGT GTTGGAAGAT TCTCAAAGCT CCGAACACAC CCGCTGGCGT TCTTCGCATC 
TTCTTCCACG ACTGCTTTGT CTGGGCGTGT GTAGTTTATA TACCTTTTAG CTAGATAGTC CTC 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGAAAGCTG GCTCTACTCA GACGAGAGGA CCGGGAGAAG AATGGCCAGT TTATACATTT ATCGGATCTG GAACGACCTT TGCGTTCCTG GCCTTGATCC TGTATCCCGC CACGGATGCA  CCTGATGCAG CGGGCCTCAG CTACGATCAG ACTTGCCCGA ATGATnnnnn nnnnnnnnnn nGCGTGGCGT GTTGGAAGAT TCTCAAAGCT CCGAACACAC CCGCTGGCGT TCTTCGCATC 
TTCTTCCACG ACTGCTTTGT CTGGGCGTGT GTAGTTTATA TACCTTTTAG CTAGATAGTC CTC 

Retrieve as FASTA