Entry information : Osin2CysPrx (ycf42)
Entry ID 11135
Creation 2012-06-08 (Catherine Mathe)
Last sequence changes 2012-06-08 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-11 (Christophe Dunand)
Peroxidase information: Osin2CysPrx (ycf42)
Name (synonym) Osin2CysPrx (ycf42)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Eupodiscaceae Odontella
Organism Odontella sinensis    [TaxId: 2839 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Osin2CysPrx
start..stop
S start..stop
Tps2CysPrx 332 8e-118 1..203 1..211
Toc2CysPrx 324 7e-115 1..203 1..211
Ptr2CysPrx 317 7e-112 1..203 1..203
Sacu2CysPrx 275 1e-95 6..173 6..173
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 57112..57726 615  
complement(join(57112..57726))


exon

Literature and cross-references Osin2CysPrx (ycf42)
Literature Kowallik,K.V., Stoebe,B., Schaffran,I., Kroth-Pancic,P. and Freier,U.
The Chloroplast Genome of a chlorophyll a+c- containing Alga, Odontella sinensis. Plant Mol. Biol. Rep. 13, 336-342 (1995)
Protein ref. UniProtKB:   P49537
DNA ref. GenBank:   Z67753.1 (57726..57112)
Protein sequence: Osin2CysPrx (ycf42)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   205
PWM (Da):   %s   23504.3 Transmb domain:   %s   i37-59o
PI (pH):   %s   8.94
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTNFPKIGKT PPNFLTIGVY KKRLGKIRLS DYRGKKYVIL FFYPANFTAI SPTELMLLSD RISEFRKLST QILAISVDSP FSHLQYLLCN REEGGLEDLN YPLVSDLTQT ITRDYQVLTD 
EGLAFPGLFI IDKEGIIQYY TVNNLLCGRN INELLRILES IQYVKENPGY ACPVNWNFGD QVFYSHPLKS KIYFKDLYSP KKSS* 

Retrieve as FASTA  
Remarks Complete sequence coded on chloroplastic genome (no intron). No EST available.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACAAACT TTCCAAAAAT TGGTAAGACG CCTCCTAATT TTTTAACAAT TGGTGTTTAT AAAAAACGAT TAGGAAAGAT TCGTTTATCG GATTATCGAG GTAAAAAATA TGTGATTTTA  TTCTTTTATC CGGCTAATTT TACAGCCATT TCTCCAACAG AATTAATGTT ATTAAGTGAC CGTATTTCGG AATTTCGAAA ATTATCTACA CAAATTCTTG CAATTTCAGT GGATAGTCCT  TTTTCACATT TACAATATTT ATTATGTAAT CGTGAAGAAG GAGGATTAGA GGATCTTAAT TATCCTTTAG TTTCAGATTT AACACAAACA ATTACTCGTG ATTACCAGGT ATTAACAGAT  GAAGGATTAG CTTTTCCTGG TTTGTTCATT ATTGACAAAG AAGGTATAAT TCAATACTAT ACAGTTAATA ATTTATTATG TGGTAGAAAT ATAAATGAAT TACTTCGTAT TTTAGAATCC  ATTCAATATG TGAAAGAAAA CCCTGGTTAT GCTTGTCCTG TTAATTGGAA TTTTGGAGAC CAAGTTTTCT ATTCACATCC TTTGAAATCA AAAATATATT TTAAAGATTT ATATTCTCCT 
AAAAAAAGCT CGTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACAAACT TTCCAAAAAT TGGTAAGACG CCTCCTAATT TTTTAACAAT TGGTGTTTAT AAAAAACGAT TAGGAAAGAT TCGTTTATCG GATTATCGAG GTAAAAAATA TGTGATTTTA  TTCTTTTATC CGGCTAATTT TACAGCCATT TCTCCAACAG AATTAATGTT ATTAAGTGAC CGTATTTCGG AATTTCGAAA ATTATCTACA CAAATTCTTG CAATTTCAGT GGATAGTCCT  TTTTCACATT TACAATATTT ATTATGTAAT CGTGAAGAAG GAGGATTAGA GGATCTTAAT TATCCTTTAG TTTCAGATTT AACACAAACA ATTACTCGTG ATTACCAGGT ATTAACAGAT  GAAGGATTAG CTTTTCCTGG TTTGTTCATT ATTGACAAAG AAGGTATAAT TCAATACTAT ACAGTTAATA ATTTATTATG TGGTAGAAAT ATAAATGAAT TACTTCGTAT TTTAGAATCC  ATTCAATATG TGAAAGAAAA CCCTGGTTAT GCTTGTCCTG TTAATTGGAA TTTTGGAGAC CAAGTTTTCT ATTCACATCC TTTGAAATCA AAAATATATT TTAAAGATTT ATATTCTCCT 
AAAAAAAGCT CGTAA 

Retrieve as FASTA