Entry information : Sacu2CysPrx (ycf42)
Entry ID 11139
Creation 2012-06-08 (Catherine Mathe)
Last sequence changes 2012-06-08 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-11 (Christophe Dunand)
Peroxidase information: Sacu2CysPrx (ycf42)
Name (synonym) Sacu2CysPrx (ycf42)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Stramenopiles; Bacillariophyta (diatoms); Bacillariophyta (diatoms); Bacillariophyta (diatoms)
Organism Synedra acus    [TaxId: 1436140 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Sacu2CysPrx
start..stop
S start..stop
Ptr2CysPrx 280 4e-98 1..175 1..175
Osin2CysPrx 275 1e-95 6..173 6..173
Toc2CysPrx 265 6e-92 1..173 1..173
Tps2CysPrx 263 3e-91 1..173 1..173
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 59159..59686 528  
join(59159..59686)


exon

Literature and cross-references Sacu2CysPrx (ycf42)
Protein ref. GenPept:   YP_005089707.1
DNA ref. GenBank:   NC_016731.1 (59159..59686)
Protein sequence: Sacu2CysPrx (ycf42)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   176
PWM (Da):   %s   19878.62  
PI (pH):   %s   9.24
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLSSLQVGKL APNFLTIGVY KNQLGKIRLS DYRGKKYVIL VFYPANFTSL SVTELIGLND RISEFKKLSA QVLAISMDSP FSHLQFLLAT RYQNGLKELD YPLISDLTQK ITTNYQLLTE 
DGLAFPGLFI IDKEGIIQYY TVNNLLCGRN VNEILRVLRS IQYVKENPGQ ICPFE* 

Retrieve as FASTA  
Remarks Complete sequence coded on chloroplastic genome (no intron). No EST available.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTCAGTT CTTTACAAGT TGGAAAACTA GCTCCAAATT TTTTAACCAT TGGAGTTTAC AAAAATCAAT TAGGTAAAAT TAGATTATCT GATTACAGGG GAAAAAAATA TGTAATTCTT  GTTTTTTATC CAGCAAATTT TACATCTCTT TCAGTTACAG AGTTAATTGG ATTAAATGAT AGAATTTCTG AGTTTAAAAA ATTGTCTGCA CAAGTACTTG CGATATCTAT GGATAGTCCA  TTTTCACATT TGCAATTTCT ATTAGCCACT CGCTATCAAA ATGGTTTAAA AGAATTAGAT TACCCATTAA TTTCTGACTT AACTCAAAAA ATAACCACTA ATTATCAGTT ATTAACAGAA  GATGGACTTG CGTTTCCAGG TCTTTTTATT ATTGACAAGG AGGGAATCAT TCAATACTAT ACTGTAAATA ATTTATTATG TGGAAGAAAT GTTAACGAAA TTCTTCGAGT TTTACGATCA 
ATTCAATATG TAAAAGAAAA TCCGGGACAA ATTTGTCCAT TTGAGTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTCAGTT CTTTACAAGT TGGAAAACTA GCTCCAAATT TTTTAACCAT TGGAGTTTAC AAAAATCAAT TAGGTAAAAT TAGATTATCT GATTACAGGG GAAAAAAATA TGTAATTCTT  GTTTTTTATC CAGCAAATTT TACATCTCTT TCAGTTACAG AGTTAATTGG ATTAAATGAT AGAATTTCTG AGTTTAAAAA ATTGTCTGCA CAAGTACTTG CGATATCTAT GGATAGTCCA  TTTTCACATT TGCAATTTCT ATTAGCCACT CGCTATCAAA ATGGTTTAAA AGAATTAGAT TACCCATTAA TTTCTGACTT AACTCAAAAA ATAACCACTA ATTATCAGTT ATTAACAGAA  GATGGACTTG CGTTTCCAGG TCTTTTTATT ATTGACAAGG AGGGAATCAT TCAATACTAT ACTGTAAATA ATTTATTATG TGGAAGAAAT GTTAACGAAA TTCTTCGAGT TTTACGATCA 
ATTCAATATG TAAAAGAAAA TCCGGGACAA ATTTGTCCAT TTGAGTAA 

Retrieve as FASTA