Entry information : Toc2CysPrx (ycf42)
Entry ID 11141
Creation 2012-06-08 (Catherine Mathe)
Last sequence changes 2012-06-08 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-11 (Christophe Dunand)
Peroxidase information: Toc2CysPrx (ycf42)
Name (synonym) Toc2CysPrx (ycf42)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira
Organism Thalassiosira oceanica    [TaxId: 159749 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Toc2CysPrx
start..stop
S start..stop
Tps2CysPrx 378 7e-136 1..211 1..211
Osin2CysPrx 324 8e-115 1..211 1..203
Ptr2CysPrx 306 8e-108 1..210 1..202
Sacu2CysPrx 265 7e-92 1..173 1..173
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 47614..48249 636  
join(47614..48249)


exon

Literature and cross-references Toc2CysPrx (ycf42)
Literature Lommer,M., Roy,A.S., Schilhabel,M., Schreiber,S., Rosenstiel,P. and LaRoche,J. Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation. BMC Genomics 11, 718 (2010)
Protein ref. GenPept:   YP_004072580.1
DNA ref. GenBank:   NC_014808.1 (47614..48249)
Protein sequence: Toc2CysPrx (ycf42)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   212
PWM (Da):   %s   24181.95  
PI (pH):   %s   10.08
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MITFPQIGKR APNFITVGVF KKRLGRIRLS DYRGKKYVML IFYPANFTPV APTELIALSD QVSEFRKLST QILAISIDSP FSHLQSLLVS RKKGGLANLN YPLISDLNHT ITTDYRLLTE 
EGLAVPGVFI IDKEGIIQYY TVNNLLCSRS INELLRIIES IQYVKKNPGQ ACPVNWQSSS FKNFYQYEQV LYSHPLKSKL YFKELYSSKK N* 

Retrieve as FASTA  
Remarks Complete sequence coded on chloroplastic genome (no intron). No EST available.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATAACTT TTCCTCAAAT CGGAAAAAGG GCACCTAATT TTATAACAGT TGGAGTTTTT AAAAAACGTT TAGGCCGAAT TCGTTTATCA GATTATCGTG GAAAAAAGTA TGTTATGCTT  ATTTTTTATC CTGCTAACTT TACACCTGTA GCCCCAACAG AATTGATCGC ATTAAGTGAT CAAGTATCTG AATTTAGAAA ACTATCAACT CAAATTTTAG CAATTTCAAT TGATAGTCCT  TTTTCACATC TTCAGTCACT ATTAGTAAGT CGAAAAAAGG GAGGATTAGC AAATTTAAAT TATCCTTTAA TTTCTGACTT AAACCATACT ATTACAACAG ATTATAGACT TTTAACTGAA  GAAGGGTTAG CTGTGCCTGG GGTATTCATT ATTGACAAAG AAGGAATAAT TCAATATTAT ACTGTTAACA ATTTATTATG TAGTCGGAGT ATAAATGAAT TGCTTCGTAT TATTGAATCA  ATTCAATATG TGAAAAAAAA TCCAGGTCAA GCTTGTCCAG TAAATTGGCA ATCTTCTTCT TTTAAGAATT TTTACCAATA TGAACAAGTA TTATATTCAC ATCCTTTAAA ATCAAAACTT 
TACTTTAAGG AGCTATACTC TTCTAAAAAA AATTAA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATAACTT TTCCTCAAAT CGGAAAAAGG GCACCTAATT TTATAACAGT TGGAGTTTTT AAAAAACGTT TAGGCCGAAT TCGTTTATCA GATTATCGTG GAAAAAAGTA TGTTATGCTT  ATTTTTTATC CTGCTAACTT TACACCTGTA GCCCCAACAG AATTGATCGC ATTAAGTGAT CAAGTATCTG AATTTAGAAA ACTATCAACT CAAATTTTAG CAATTTCAAT TGATAGTCCT  TTTTCACATC TTCAGTCACT ATTAGTAAGT CGAAAAAAGG GAGGATTAGC AAATTTAAAT TATCCTTTAA TTTCTGACTT AAACCATACT ATTACAACAG ATTATAGACT TTTAACTGAA  GAAGGGTTAG CTGTGCCTGG GGTATTCATT ATTGACAAAG AAGGAATAAT TCAATATTAT ACTGTTAACA ATTTATTATG TAGTCGGAGT ATAAATGAAT TGCTTCGTAT TATTGAATCA  ATTCAATATG TGAAAAAAAA TCCAGGTCAA GCTTGTCCAG TAAATTGGCA ATCTTCTTCT TTTAAGAATT TTTACCAATA TGAACAAGTA TTATATTCAC ATCCTTTAAA ATCAAAACTT 
TACTTTAAGG AGCTATACTC TTCTAAAAAA AATTAA 

Retrieve as FASTA