Entry information : Ptr2CysPrx (ycf42)
Entry ID 11142
Creation 2012-06-08 (Catherine Mathe)
Last sequence changes 2012-06-08 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-11 (Christophe Dunand)
Peroxidase information: Ptr2CysPrx (ycf42)
Name (synonym) Ptr2CysPrx (ycf42)
Class Typical 2-Cysteine peroxiredoxin    [Orthogroup: 2CysPrx001]
Taxonomy Eukaryota Bacillariophyta Bacillariophyceae Phaeodactylaceae Phaeodactylum
Organism Phaeodactylum tricornutum    [TaxId: 2850 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value Ptr2CysPrx
start..stop
S start..stop
Osin2CysPrx 317 7e-112 1..203 1..203
Tps2CysPrx 308 3e-108 1..202 1..210
Toc2CysPrx 306 8e-108 1..202 1..210
Sacu2CysPrx 280 5e-98 1..175 1..175
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 60693..61304 612  
join(60693..61304)


exon

Literature and cross-references Ptr2CysPrx (ycf42)
Literature Oudot-Le Secq,M.P., Grimwood,J., Shapiro,H., Armbrust,E.V., Bowler,C. and Green,B.R. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol. Genet. Genomics 277 (4), 427-439 (2007)
Protein ref. GenPept:   YP_874429.1
DNA ref. GenBank:   NC_008588.1 (60693..61304)
Protein sequence: Ptr2CysPrx (ycf42)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   204
PWM (Da):   %s   23183.33  
PI (pH):   %s   9.72
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLEHIQIGQM APNFIGVGVY KNQLGKIRLS DYHGKKYVVL IFYPSNFTAV SPTELVELNN RITEFKKLST QILAISVDSP FSHLQFLLSK RNQGGLEHLN YPLISDLSQT ITSNYKLLTK 
DGFSLPGVFI IDKEGIVQYY TVNNLLCGRS VNELLRILQS LQYLKENPGQ ACPVDWKYGD KILYSHPLKS KLYFKTLYSQ KKT* 

Retrieve as FASTA  
Remarks Complete sequence coded on chloroplastic genome (no intron). No EST available.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTAGAAC ATATTCAAAT TGGTCAAATG GCGCCTAATT TTATTGGAGT TGGTGTTTAT AAGAATCAAT TGGGTAAAAT TCGACTATCA GATTATCATG GAAAAAAATA TGTAGTCTTA  ATATTTTATC CATCCAATTT TACCGCTGTT TCACCAACAG AGTTAGTAGA ATTAAATAAT CGAATTACTG AATTTAAAAA ACTATCTACA CAAATTCTTG CAATCTCTGT AGATAGCCCA  TTTTCGCATT TACAATTTTT ATTATCAAAG AGAAATCAGG GTGGACTTGA GCACTTAAAC TATCCCTTAA TTTCAGATTT AAGTCAGACA ATTACAAGTA ATTATAAATT ATTAACAAAA  GATGGATTCT CTTTACCAGG TGTATTTATT ATTGACAAAG AAGGTATAGT TCAATACTAT ACGGTTAATA ACTTATTATG TGGACGAAGT GTCAATGAGT TACTTCGTAT TTTACAATCT  CTTCAGTATC TTAAAGAAAA TCCGGGACAA GCGTGCCCGG TTGATTGGAA ATATGGGGAC AAAATTTTAT ACTCTCATCC GTTGAAATCA AAGCTTTATT TCAAAACTTT ATATTCTCAA 
AAAAAGACTT AA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTTAGAAC ATATTCAAAT TGGTCAAATG GCGCCTAATT TTATTGGAGT TGGTGTTTAT AAGAATCAAT TGGGTAAAAT TCGACTATCA GATTATCATG GAAAAAAATA TGTAGTCTTA  ATATTTTATC CATCCAATTT TACCGCTGTT TCACCAACAG AGTTAGTAGA ATTAAATAAT CGAATTACTG AATTTAAAAA ACTATCTACA CAAATTCTTG CAATCTCTGT AGATAGCCCA  TTTTCGCATT TACAATTTTT ATTATCAAAG AGAAATCAGG GTGGACTTGA GCACTTAAAC TATCCCTTAA TTTCAGATTT AAGTCAGACA ATTACAAGTA ATTATAAATT ATTAACAAAA  GATGGATTCT CTTTACCAGG TGTATTTATT ATTGACAAAG AAGGTATAGT TCAATACTAT ACGGTTAATA ACTTATTATG TGGACGAAGT GTCAATGAGT TACTTCGTAT TTTACAATCT  CTTCAGTATC TTAAAGAAAA TCCGGGACAA GCGTGCCCGG TTGATTGGAA ATATGGGGAC AAAATTTTAT ACTCTCATCC GTTGAAATCA AAGCTTTATT TCAAAACTTT ATATTCTCAA 
AAAAAGACTT AA 

Retrieve as FASTA