Entry information : BnPrx052_other
Entry ID 11222
Creation 2012-07-23 (Christophe Dunand)
Last sequence changes 2012-07-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-07-23 (Christophe Dunand)
Peroxidase information: BnPrx052_other
Name BnPrx052_other
Class Class III peroxidase    [Orthogroup: Prx261]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue type Germinating seeds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnPrx052_other
start..stop
S start..stop
BrPrx52-1Ac_other 597 0 1..324 1..324
BstrPrx47 482 3e-173 1..324 1..324
AruPrx52 479 2e-172 1..324 1..324
AlyPrx52 473 8e-170 1..324 1..324
Literature and cross-references BnPrx052_other
Literature Tsang,E. Gene expression in seed germination in Brassica napus
EST ref. GenBank:   EE428205.1 [5' end]   ES913476.1 [3' end]
Cluster/Prediction ref. UniGene:   Bna.17679
Protein sequence: BnPrx052_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   324 (296)
PWM (Da):   %s   34518.31 (31499.7)  
PI (pH):   %s   7.74 (8.00) Peptide Signal:   %s   cut: 29 range:29-324
Sequence
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Send to Peroxiscan
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MDSNKLIAFL VIVVTLLLHG NNNTVVEAQL RPDFYRNTCP LLHAAVRGAV TSAVAFDPRM GASLLRLFYL DCFVNGCDAS ILLDDTSSFT GEQNAASNHN SARGFNVIDN IKSAVERVCP  GVVSCADILA IAARDSVVTL GGPSWLLNLG RRDARTASQA AANSSIPAPT SSLSQLITSF ANLGFTARDM VALSGAHTIG QAQCRNFRTR IYQETNIAPP FAATLQQNCP IASGSGDGNL 
APLDSITPFV FDNSYFRNLM SQRGLLHSDQ VLFNGGSTDS IVREYSQNAR VFRNDFAAAM VKMSHISPLT GTAGEIRSNC GRTN 

Retrieve as FASTA  
Remarks Complete sequence from 6 ESTs.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGATTCAA ATAAGCTTAT TGCCTTTTTG GTTATCGTCG TTACACTATT ACTGCATGGT AATAACAATA CCGTCGTTGA AGCACAACTC AGACCCGATT TCTACAGAAA TACTTGCCCT  CTTCTTCACG CCGCCGTCCG AGGAGCCGTT ACTTCTGCCG TTGCATTCGA TCCTAGAATG GGTGCATCTC TCCTTCGTCT GTTCTACCTC GACTGCTTCG TCAACGGATG CGACGCTTCG  ATTTTACTAG ATGACACATC AAGCTTCACG GGAGAACAAA ACGCTGCCTC AAACCACAAT TCTGCTCGAG GGTTTAATGT CATCGACAAC ATCAAATCAG CGGTTGAGAG AGTATGCCCT  GGGGTCGTGT CTTGTGCTGA TATCTTAGCC ATCGCAGCTA GAGACTCGGT CGTAACCCTT GGAGGGCCTA GTTGGCTGTT GAATTTAGGA AGAAGAGATG CAAGAACGGC GAGTCAAGCG  GCGGCGAATA GTAGCATTCC AGCGCCGACT TCGAGTCTGA GCCAGCTTAT TACTAGTTTC GCCAACCTTG GATTCACCGC TAGAGATATG GTTGCTCTCT CCGGCGCGCA CACGATCGGG  CAAGCCCAGT GCAGAAACTT CCGAACGAGG ATCTACCAAG AAACAAACAT TGCCCCCCCT TTCGCCGCCA CACTCCAGCA AAACTGCCCG ATAGCCTCCG GCTCCGGCGA CGGAAATCTA  GCTCCACTGG ACTCAATTAC ACCGTTTGTT TTCGACAACA GTTACTTCAG GAACCTCATG AGCCAGAGAG GTCTCCTCCA TTCTGACCAA GTGCTTTTCA ACGGTGGCTC CACCGACTCC  ATCGTCCGTG AGTACAGCCA AAATGCGAGG GTTTTTCGCA ACGATTTCGC GGCGGCGATG GTCAAGATGA GTCATATTAG CCCCTTGACT GGCACTGCTG GTGAGATCCG GAGTAACTGC 
GGGAGGACAA ACTGA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAAGCACCAA ATCAACTATA AGTCGTCTAT CCGAGTCCTT ATTCACTGAA ACATGGATTC AAATAAGCTT ATTGCCTTTT TGGTTATCGT CGTTACACTA TTACTGCATG GTAATAACAA  TACCGTCGTT GAAGCACAAC TCAGACCCGA TTTCTACAGA AATACTTGCC CTCTTCTTCA CGCCGCCGTC CGAGGAGCCG TTACTTCTGC CGTTGCATTC GATCCTAGAA TGGGTGCATC  TCTCCTTCGT CTGTTCTACC TCGACTGCTT CGTCAACGGA TGCGACGCTT CGATTTTACT AGATGACACA TCAAGCTTCA CGGGAGAACA AAACGCTGCC TCAAACCACA ATTCTGCTCG  AGGGTTTAAT GTCATCGACA ACATCAAATC AGCGGTTGAG AGAGTATGCC CTGGGGTCGT GTCTTGTGCT GATATCTTAG CCATCGCAGC TAGAGACTCG GTCGTAACCC TTGGAGGGCC  TAGTTGGCTG TTGAATTTAG GAAGAAGAGA TGCAAGAACG GCGAGTCAAG CGGCGGCGAA TAGTAGCATT CCAGCGCCGA CTTCGAGTCT GAGCCAGCTT ATTACTAGTT TCGCCAACCT  TGGATTCACC GCTAGAGATA TGGTTGCTCT CTCCGGCGCG CACACGATCG GGCAAGCCCA GTGCAGAAAC TTCCGAACGA GGATCTACCA AGAAACAAAC ATTGCCCCCC CTTTCGCCGC  CACACTCCAG CAAAACTGCC CGATAGCCTC CGGCTCCGGC GACGGAAATC TAGCTCCACT GGACTCAATT ACACCGTTTG TTTTCGACAA CAGTTACTTC AGGAACCTCA TGAGCCAGAG  AGGTCTCCTC CATTCTGACC AAGTGCTTTT CAACGGTGGC TCCACCGACT CCATCGTCCG TGAGTACAGC CAAAATGCGA GGGTTTTTCG CAACGATTTC GCGGCGGCGA TGGTCAAGAT  GAGTCATATT AGCCCCTTGA CTGGCACTGC TGGTGAGATC CGGAGTAACT GCGGGAGGAC AAACTGATTC AAACCTTCGT ATTCCAGATA TTTCGAAGAT CTCTATTAAT GTTTTCGCTT 
TTTTTTTAAA AAAATTTCTA TTCCTGTCGG ACTTTGTACG TTTGCTTTAA TAAAAGTCTT AATAAAACGA GCTATGAGTT CGT 

Retrieve as FASTA