Entry information : AlyPrx[P]19
Entry ID 11255
Creation 2012-07-27 (Christophe Dunand)
Last sequence changes 2012-07-27 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Qiang Li
Last annotation changes 2012-08-13 (Qiang Li)
Peroxidase information: AlyPrx[P]19
Name AlyPrx[P]19
Class Class III peroxidase     [Orthogroup: Prx034]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx[P]19
start..stop
S start..stop
AhalPrx52 304 3e-108 1..156 1..156
AtPrx19 271 1e-92 1..156 1..154
CrubPrx59 270 2e-92 1..156 1..155
CagraPrx63 270 5e-92 1..156 1..155
Literature and cross-references AlyPrx[P]19
DNA ref. JGI genome:   scaffold_4 (16144766..16145615)
Protein sequence: AlyPrx[P]19
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   156 (130)
PWM (Da):   %s   17291.05 (14459.5)  
PI (pH):   %s   7.91 (7.90) Peptide Signal:   %s   cut: 27 range:27-156
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MHVLSLSLSS IFLYLFLTST IPISPAKLTI SHPPALRRLH HRELSGDYYS KKCPQLENLV GSVTSQRFKE APISAPATIR LFFHDCFVEG CDGSILIETK KGSKKLAERE AYANKELREE 
GFESIIKAKE LVESHCPSLV SCSDILAIAA RDFIHL 

Retrieve as FASTA  
Remarks Pseudogene from genomic (exon 1 and 2).
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCATGTCC TATCTCTTTC TTTATCCTCA ATATTCTTGT ATCTCTTCCT CACATCAACC ATTCCCATTT CTCCGGCCAA ACTAACAATC TCTCACCCCC CGGCACTAAG GCGCCTCCAC  CACAGAGAGC TCTCCGGCGA TTACTACTCC AAGAAATGTC CTCAGCTCGA AAATCTCGTC GGTTCCGTCA CTTCTCAGCG GTTCAAAGAA GCCCCCATCT CAGCTCCAGC CACCATTCGC  CTCTTCTTTC ACGACTGCTT CGTTGAGGTT TAATTCTACC AAAATTTTAC ATTAGTTTTC TTACTCCAGC GCACTATAGC ATTTACCATA AACAACAACA CGCATTTTAG CATTAGTAAC  TAGCATGGTC AAATTTTAAC GCACCATCTC ATTATATCGC GAAAGTCAAA ACACCAATAT GGAAATAATC CCGACAAAAA TTTCACTGGT TCAGTTTCCA ACGTAGCGTA GTTTAGCAAA  CTACAGTCAA GATTCGGTGC ATTTTAGCGA AAAAAATACT CAAACAGCAT TTTGGCCTGC ATCGTTGTTT GTTTAACAAA TAACAGTAGA CATCTCATGC ATGAAAAACT AATAAATTAT  GGACTACGAT GTTTGATAAT CAACATAAGG TGAAATTGGA ATTTTGAAGG GTTGTGATGG GTCGATATTG ATAGAAACAA AGAAAGGAAG CAAGAAATTA GCAGAAAGAG AAGCATATGC  GAATAAGGAA TTGAGAGAAG AAGGATTCGA GAGTATTATT AAGGCAAAGG AATTGGTCGA ATCTCATTGC CCTTCTCTCG TCTCTTGCTC TGATATTCTC GCTATCGCCG CTAGAGATTT 
CATCCACCTG 

Retrieve as FASTA