Entry information : CroPrx09(CRO_T030339 / cra_locus_5755_iso_2_len_923_ver_3)
Entry ID 11267
Creation 2012-08-17 (Christophe Dunand)
Last sequence changes 2012-08-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-04-09 (Christophe Dunand)
Peroxidase information: CroPrx09(CRO_T030339 / cra_locus_5755_iso_2_len_923_ver_3)
Name CroPrx09(CRO_T030339 / cra_locus_5755_iso_2_len_923_ver_3)
Class Class III peroxidase     [Orthogroup: Prx026]*
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx09
start..stop
S start..stop
NtPrx07-1B 535 0 1..321 1..317
NtPrx07-1A 531 0 1..321 1..328
RcoPrx06 527 0 1..321 1..319
LePrx20 521 0 1..321 1..317
Literature and cross-references CroPrx09(CRO_T030339 / cra_locus_5755_iso_2_len_923_ver_3)
Protein sequence: CroPrx09(CRO_T030339 / cra_locus_5755_iso_2_len_923_ver_3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   322
PWM (Da):   %s   35582.36  
PI (pH):   %s   5.36
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MATLNLFIVI MLMDIIVSGW RFGANGLSMN YYMMSCPFAE NIVKDTVNRA LQSDPTLAAA LIRMHFHDCF IQGCDASILI DSTKDNTAEK DSPANLSLRG YEIIDDIKEQ LENQCPGIVS  CADILAMASR DAVFFAGGPV YDIPKGRKDG TRSKIMDTIN LPAPTLNSSE LIKMFGQHGF TAQEMVVLSG AHTLGVARCS SFKHRLSKFD STHEVDPSID TQFVKTLSMT CSVGDNAEQP 
FDSTKNSFDN DYFNQLQRRN GVLFSDQTLF ATPRTKGIVN GYAMNQAMFF FDFQQAMVKM SLLDVKEGNN GEVRANCRQI NN 

Retrieve as FASTA  
Remarks Complete sequence from genomic and EST (First exon is missing. Incorrect prediction from MPGR. cra_locus_5755_iso_5_len_875_ver_3, and cra_locus_5755_iso_1_len_406_ver_3). Incorrect prediction (only exons 3 and 4 are predicted in CRO_T030339)
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAATCTGATC CTACTCTTGC TGCTGCTCTT ATTAGAATGC ATTTCCATGA CTGCTTCATT CAGGGATGTG ATGCATCAAT TCTAATTGAT TCAACAAAAG ACAACACAGC AGAGAAAGAT  TCACCTGCAA ATCTGAGCTT GAGAGGTTAT GAGATTATAG ATGATATAAA GGAACAATTG GAAAATCAGT GCCCAGGAAT TGTTTCCTGT GCTGATATTC TTGCAATGGC TTCCAGGGAT  GCTGTCTTCT TTGCTGGAGG ACCAGTATAT GACATTCCCA AAGGAAGAAA AGATGGAACA AGATCTAAAA TAATGGACAC AATCAATTTG CCAGCTCCCA CTTTAAACTC TTCAGAGCTC  ATCAAGATGT TTGGTCAGCA CGGTTTTACT GCTCAAGAAA TGGTGGTTTT GTCCGGGGCA CACACACTAG GAGTGGCAAG GTGTTCATCA TTCAAGCACA GATTGAGTAA ATTTGACTCA  ACCCATGAGG TGGATCCAAG TATAGACACA CAATTTGTGA AAACCCTATC AATGACATGC AGTGTTGGTG ATAATGCTGA ACAGCCCTTT GATTCAACAA AGAATAGTTT TGACAATGAT  TATTTCAACC AATTGCAAAG GAGAAACGGT GTGCTTTTCT CTGATCAAAC ACTATTTGCC ACTCCAAGAA CCAAAGGGAT TGTCAATGGT TATGCTATGA ATCAAGCCAT GTTTTTCTTT 
GATTTCCAAC AAGCTATGGT CAAAATGAGT TTGCTTGATG TTAAAGAAGG AAATAATGGG GAAGTTAGGG CCAATTGTCG CCAAATCAAC AATTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAATCTGATC CTACTCTTGC TGCTGCTCTT ATTAGAATGC ATTTCCATGA CTGCTTCATT CAGGGATGTG ATGCATCAAT TCTAATTGAT TCAACAAAAG ACAACACAGC AGAGAAAGAT  TCACCTGCAA ATCTGAGCTT GAGAGGTTAT GAGATTATAG ATGATATAAA GGAACAATTG GAAAATCAGT GCCCAGGAAT TGTTTCCTGT GCTGATATTC TTGCAATGGC TTCCAGGGAT  GCTGTCTTCT TTGCTGGAGG ACCAGTATAT GACATTCCCA AAGGAAGAAA AGATGGAACA AGATCTAAAA TAATGGACAC AATCAATTTG CCAGCTCCCA CTTTAAACTC TTCAGAGCTC  ATCAAGATGT TTGGTCAGCA CGGTTTTACT GCTCAAGAAA TGGTGGTTTT GTCCGGGGCA CACACACTAG GAGTGGCAAG GTGTTCATCA TTCAAGCACA GATTGAGTAA ATTTGACTCA  ACCCATGAGG TGGATCCAAG TATAGACACA CAATTTGTGA AAACCCTATC AATGACATGC AGTGTTGGTG ATAATGCTGA ACAGCCCTTT GATTCAACAA AGAATAGTTT TGACAATGAT  TATTTCAACC AATTGCAAAG GAGAAACGGT GTGCTTTTCT CTGATCAAAC ACTATTTGCC ACTCCAAGAA CCAAAGGGAT TGTCAATGGT TATGCTATGA ATCAAGCCAT GTTTTTCTTT  GATTTCCAAC AAGCTATGGT CAAAATGAGT TTGCTTGATG TTAAAGAAGG AAATAATGGG GAAGTTAGGG CCAATTGTCG CCAAATCAAC AATTGATCAT CTTGTCAATT ATTAAGATAA 
TTAATTAATT GTACACTACT TTTTACATAT ATATA 

Retrieve as FASTA