Entry information : EguPrx[P]171
Entry ID 11578
Creation 2012-12-05 (Qiang Li)
Last sequence changes 2013-01-22 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-11 (Christophe Dunand)
Peroxidase information: EguPrx[P]171
Name EguPrx[P]171
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus gunnii    [TaxId: 3933 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EguPrx[P]171
start..stop
S start..stop
EgrPrx[P]171 261 5e-92 1..143 1..143
EcamPrx[P]171 213 2e-72 13..143 50..180
EglPrx[P]171 159 6e-52 1..143 1..99
EcamPrx[P]166 161 2e-51 1..143 78..220
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6053..6479 427  
complement(join(6053..6479))


exon

Literature and cross-references EguPrx[P]171
Protein sequence: EguPrx[P]171
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   142
PWM (Da):   %s   15700.05  
PI (pH):   %s   10.38
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
FLQQGFIAKE MVALLVSHTI GKARHTTFRS RLDN*SNINS SFITSLKADC LSSGGDKNLS HPEVMSLASF DxSYLRNLVS QKxLLHLDQR LFSGDLMDHQ VTVYLNNLDL FWSNLxNAMV 
RMGGLSHLTR FSDHIRMNRR KVN 

Retrieve as FASTA  
Remarks Pseudogene from genomic (5' end is missing, Stop in frame).
scaffold_11_36687 (6479..6053)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTTCTCCAAC AAGGATTCAT TGCCAAAGAA ATGGTGGCAC TCTTGGTATC CCACACCATA GGCAAGGCCA GGCACACTAC ATTCCGATCC CGGCTCGACA ACTAAAGCAA CATAAACTCA  TCGTTCATCA CATCTTTAAA GGCTGATTGC CTTAGCTCAG GAGGCGACAA AAACCTCTCC CATCCTGAAG TCATGAGCCT TGCATCCTTC GACAAnAGCT ACTTGCGCAA CTTGGTGAGC  CAAAAGGCnC TACTCCACTT AGACCAACGT CTGTTTAGTG GGGATTTGAT GGACCATCAA GTGACCGTAT ACCTCAACAA TTTGGATTTG TTCTGGAGCA ACTTGCTnAA TGCAATGGTT 
AGGATGGGAG GCCTTAGCCA TCTTACCAGG TTTAGTGATC ATATAAGGAT GAATCGTAGG AAGGTCAAT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TTTCTCCAAC AAGGATTCAT TGCCAAAGAA ATGGTGGCAC TCTTGGTATC CCACACCATA GGCAAGGCCA GGCACACTAC ATTCCGATCC CGGCTCGACA ACTAAAGCAA CATAAACTCA  TCGTTCATCA CATCTTTAAA GGCTGATTGC CTTAGCTCAG GAGGCGACAA AAACCTCTCC CATCCTGAAG TCATGAGCCT TGCATCCTTC GACAAnAGCT ACTTGCGCAA CTTGGTGAGC  CAAAAGGCnC TACTCCACTT AGACCAACGT CTGTTTAGTG GGGATTTGAT GGACCATCAA GTGACCGTAT ACCTCAACAA TTTGGATTTG TTCTGGAGCA ACTTGCTnAA TGCAATGGTT 
AGGATGGGAG GCCTTAGCCA TCTTACCAGG TTTAGTGATC ATATAAGGAT GAATCGTAGG AAGGTCAAT 

Retrieve as FASTA