Entry information : EguPrx[P]173
Entry ID 11580
Creation 2012-12-05 (Qiang Li)
Last sequence changes 2013-01-22 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-11 (Christophe Dunand)
Peroxidase information: EguPrx[P]173
Name EguPrx[P]173
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus gunnii    [TaxId: 3933 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EguPrx[P]173
start..stop
S start..stop
EgrPrx[P]173 202 3e-69 1..127 1..127
EglPrx[P]173 97 4e-28 56..121 1..66
GmPrx66 98 5e-26 1..127 182..308
EcamPrx[P]173 92 6e-26 6..57 1..52
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 21028..21408 381  
complement(join(21028..21408))


exon

Literature and cross-references EguPrx[P]173
Protein sequence: EguPrx[P]173
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   124
PWM (Da):   %s   12160.88  
PI (pH):   %s   9.35
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGGTFFTNRL YNFTGKxNTx PxLNSTYATY LKGKCSTSDT TTTxAVDPGS SRSFDKAxxP HST*KHGPLP IRCCSx*PTS EPPHSRPSCS DFN*FFTExA QSMxRMGAVG VLGGGVGELR 
IDRSKIN 

Retrieve as FASTA  
Remarks Pseudogene from genomic (large 5' end is missing, stops in frame).
scaffold_11_38344 (21408..21028)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTGGTGGCA CTTTTTTCAC CAATAGGCTC TACAACTTCA CCGGAAAGGn CAACACCnAC CCnnCCCTCA ACTCCACCTA TGCCACCTAC TTAAAGGGCA AGTGCAGCAC TTCCGACACG  ACCACCACCn TGGCCGTCGA CCCCGGTAGC TCCCGGAGCT TCGATAAGGC AnTAnTGCCC CATTCTACTT AAAAGCATGG GCCTCTTCCA ATTCGATGCT GCTCTnTTTG ACCAACAAGC  GAGCCACCAC ATTCGCGTCC CAGTTGCTCG GACTTCAACT AGTTCTTCAC CGAATTnGCA CAGTCGATGT nGAGGATGGG CGCCGTCGGA GTGCTCGGGG GCGGTGTTGG AGAACTTAGA 
ATAGATCGTA GCAAGATCAA C 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTGGTGGCA CTTTTTTCAC CAATAGGCTC TACAACTTCA CCGGAAAGGn CAACACCnAC CCnnCCCTCA ACTCCACCTA TGCCACCTAC TTAAAGGGCA AGTGCAGCAC TTCCGACACG  ACCACCACCn TGGCCGTCGA CCCCGGTAGC TCCCGGAGCT TCGATAAGGC AnTAnTGCCC CATTCTACTT AAAAGCATGG GCCTCTTCCA ATTCGATGCT GCTCTnTTTG ACCAACAAGC  GAGCCACCAC ATTCGCGTCC CAGTTGCTCG GACTTCAACT AGTTCTTCAC CGAATTnGCA CAGTCGATGT nGAGGATGGG CGCCGTCGGA GTGCTCGGGG GCGGTGTTGG AGAACTTAGA 
ATAGATCGTA GCAAGATCAA C 

Retrieve as FASTA