Entry information : EguPrx[P]190
Entry ID 11589
Creation 2012-12-05 (Qiang Li)
Last sequence changes 2012-12-17 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-13 (Christophe Dunand)
Peroxidase information: EguPrx[P]190
Name EguPrx[P]190
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus gunnii    [TaxId: 3933 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EguPrx[P]190
start..stop
S start..stop
EgrPrx[P]190 191 2e-65 1..101 1..101
EglPrx[P]190 182 6e-62 1..101 1..101
EcamPrx[P]190 113 6e-35 32..90 1..59
PtPrx31 64 0.00000000000009 32..90 14..76
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 41194..41514 321  
join(41194..41514)


exon

Literature and cross-references EguPrx[P]190
Protein sequence: EguPrx[P]190
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   106
PWM (Da):   %s   11192.65 Transmb domain:   %s   o15-34i77-99o
PI (pH):   %s   7.12
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

KKAGSTQTRG PGEEWPVYTF IGSGTTFAFL ALILYPTTDA PDAAGLSYDQ TCPNEGKLIR GVACWKILKA PNTPAGVLxI FFHDCFVSAC VVYIPFS*IF LSSMISL 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Short PS with stop in frame. Scaffold_10_33407 (41194..41514) .
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGAAAGCTG GCTCTACTCA GACGAGAGGA CCGGGAGAAG AATGGCCAGT TTATACATTT ATCGGATCTG GAACGACCTT TGCGTTCCTG GCCTTGATCC TGTATCCTAC CACGGATGCA  CCnGATGCAG CGGGCCTTAG CTACGATCAG ACTTGCCCGA ATGAGGGGAA GCTAATCCGC GGCGTGGCGT GTTGGAAAAT TCTAAAAGCT CCGAACACAC CCGCTGGCGT TCTTCnCATC 
TTCTTCCACG ACTGCTTTGT CTCGGCGTGT GTAGTTTATA TACCTTTTAG CTAGATATTC CTCTCCTCAA TGATTTCATT A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAGAAAGCTG GCTCTACTCA GACGAGAGGA CCGGGAGAAG AATGGCCAGT TTATACATTT ATCGGATCTG GAACGACCTT TGCGTTCCTG GCCTTGATCC TGTATCCTAC CACGGATGCA  CCnGATGCAG CGGGCCTTAG CTACGATCAG ACTTGCCCGA ATGAGGGGAA GCTAATCCGC GGCGTGGCGT GTTGGAAAAT TCTAAAAGCT CCGAACACAC CCGCTGGCGT TCTTCnCATC 
TTCTTCCACG ACTGCTTTGT CTCGGCGTGT GTAGTTTATA TACCTTTTAG CTAGATATTC CTCTCCTCAA TGATTTCATT A 

Retrieve as FASTA