Entry information : EguPrx[P]37
Entry ID 11595
Creation 2012-12-05 (Qiang Li)
Last sequence changes 2012-12-17 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-04-06 (Christophe Dunand)
Peroxidase information: EguPrx[P]37
Name EguPrx[P]37
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus gunnii    [TaxId: 3933 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EguPrx[P]37
start..stop
S start..stop
EgrPrx[P]37 229 5e-80 1..119 1..118
EgrPrx[P]40 145 1e-46 1..117 17..131
EgrPrx32 133 1e-39 1..119 17..134
EglPrx32 133 1e-39 1..119 17..134
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2849..3026 178 N° 2 2727..2812 86 N° 3 2561..2651 91  
complement(join(2561..2651,2727..2812,2849..3026))


exon

Literature and cross-references EguPrx[P]37
Protein sequence: EguPrx[P]37
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   117
PWM (Da):   %s   12971.58  
PI (pH):   %s   6.22
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
DGLGSPDAPLQRRPFATLXXL*MPSSLSHHQARH*GDGAARATHGRVLAALALPRLFCQLF*NIVITI*HCTILANIAVCLGVQ*CRVEFLHNNN*GGV*RSMWMSGGILCGHLGX

Retrieve as FASTA  
Remarks Pseudogene from genomic (Stops in frame, Short PS). Scaffold_1_752 (3026..2561)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GACGGCCTCGGCTCTCCCGACGCGCCCCTACAACGACGGCCTTTCGCCACACTATTNNGACTATGAATGCCCTCAAGCCTCAGCCACCATCAAGCGCGTCATTGAGGCGATGGTGCAGCA
AGAGCGACGCATGGGCGCGTCCTTGCTGCGCTTGCACTTCCACGACTGTTTTGTCAAT
CGAAGACATATACAGCTGAATTTCACATTAATTTGTTGTTCTAAAACATAGTGATTACTATT
TAGCATTGCACAATACTTGCTAACATTGCTGTTTGTTTGGGAGTTCAATAATGCAGGGTT
GTGATGCATTGATGCTCTTGGATCCAACCCCGACCATCGACAATGAAAAGCTTGCGCTTC
ATAATAACAATTAAGGTGGAGTTTCTTCATAATAACAATTAAGGTGGAGTTTGACGGAGTATGTGGATGTCTGGTGGTATCTTGTGTGGACATCTTGGCAATCACT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GACGGCCTCGGCTCTCCCGACGCGCCCCTACAACGACGGCCTTTCGCCACACTATTNNGACTATGAATGCCCTCAAGCCTCAGCCACCATCAAGCGCGTCATTGAGGCGATGGTGCAGCA
AGAGCGACGCATGGGCGCGTCCTTGCTGCGCTTGCACTTCCACGACTGTTTTGTCAAT
TGTTCTAAAACATAGTGATTACTATTTAGCATTGCACAATACTTGCTAACATTGCTGTTTGT
TTGGGAGTTCAATAATGCAGGGTT
GTGGAGTTTCTTCATAATAACAATTAAGGTGGAGTTTGACGGAGTATGTGGATGTCTGGTGGTATCTTGTGTGGACATCTTGGCAATCACT

Retrieve as FASTA