Entry information : GbPrx01(Ginbil_Gb_11915 /Ginbil_Gb_20206)
Entry ID 1162
Creation 2008-06-19 (Christophe Dunand)
Last sequence changes 2015-02-13 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-23 (Christophe Dunand)
Peroxidase information: GbPrx01(Ginbil_Gb_11915 /Ginbil_Gb_20206)
Name GbPrx01(Ginbil_Gb_11915 /Ginbil_Gb_20206)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx01
start..stop
S start..stop
CruPrx01 578 0 29..329 25..325
CmichAPx19 575 0 29..329 25..325
PsiPrx01 557 0 28..329 36..337
PtaPrx01 556 0 26..329 34..337
Literature and cross-references GbPrx01(Ginbil_Gb_11915 /Ginbil_Gb_20206)
Literature Brenner,E.D. et al Expressed tag sequences from Gingko megasporophyll (NYBG)
Unpublished (2003)
EST ref. GenBank:   EX931007.1 [3' end]   DR064556.1 [Fragment]
Protein sequence: GbPrx01(Ginbil_Gb_11915 /Ginbil_Gb_20206)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   333 (311)
PWM (Da):   %s   37457.05 (35058.7)  
PI (pH):   %s   8.61 (8.38) Peptide Signal:   %s   cut: 23 range:23-333
Sequence
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Send to Peroxiscan
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MGVWKLVIFC VLLGLQTLRG NGDKPSSDGL VMNFYEDSCP QAEDIIREQV GLLYKKHKNT AFSWLRNIFH DCFVESCDAS LLLDSTRKSM SEKETDRSFG LRNFRYLDTI KEAVERECPG  VVSCADILVL SSRDGVVSLG GPFIPLKTGR RDGRKSRANV VEDHLPDHNE SISTVLSRFQ AIGIDTPGVV ALLGAHSVGR THCVKLVHRL YPEVDPTLDA AHADYMKWKC PDAIPNPKAV 
QYVRNDRGTP MKLDNNYYRN LMENKGLLIV DQQLYDDPRT KRYVKKMAKS QDYFFQHFAR ALTILSENNP LTGTKGEIRK QCSMANKLHG AQR 

Retrieve as FASTA  
Remarks Complete sequence from genomic (found in two other accessions Ginbil_2001674_SGTW and Ginbil_2001673_SGTW) , 47 ESTs and RNA seq (gba_locus_1453_iso_6_len_803_ver_2). Assembly by the PeroxiBase team.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGAGTCT GGAAGTTAGT CATATTTTGT GTTCTGCTCG GCTTGCAGAC ATTGCGTGGG AATGGTGATA AGCCTTCCTC TGATGGGCTG GTTATGAATT TCTATGAGGA CTCGTGTCCA  CAGGCGGAGG ATATCATCAG AGAACAAGTG GGTTTGCTGT ACAAGAAGCA CAAGAACACT GCCTTCTCAT GGCTCAGAAA CATCTTCCAC GATTGCTTTG TGGAGTCATG CGATGCATCG  CTTCTGCTGG ACTCGACGAG GAAGAGCATG TCTGAGAAGG AGACGGACAG AAGCTTTGGG CTTCGGAACT TCAGGTATCT GGACACCATC AAGGAAGCTG TGGAGAGGGA GTGCCCCGGA  GTTGTGTCCT GCGCAGACAT CCTCGTTCTG TCCTCCAGAG ATGGAGTCGT CTCGTTGGGA GGGCCGTTTA TACCACTCAA AACAGGGCGA AGGGATGGGC GGAAGAGCAG AGCCAATGTG  GTGGAAGACC ACCTTCCCGA CCACAACGAA AGCATCTCCA CGGTGCTTTC TCGCTTCCAG GCCATCGGAA TCGACACTCC TGGCGTGGTT GCTTTGTTGG GGGCTCACAG CGTGGGAAGG  ACACACTGTG TGAAACTGGT GCACAGGCTG TACCCAGAGG TGGACCCAAC GCTGGATGCC GCCCACGCGG ATTACATGAA GTGGAAGTGC CCAGACGCCA TTCCAAACCC CAAGGCAGTG  CAATACGTGA GGAACGACAG AGGCACGCCC ATGAAGCTGG ACAACAACTA CTACCGGAAT CTCATGGAAA ACAAGGGCCT TCTGATCGTC GATCAGCAGC TGTATGACGA CCCGAGGACC  AAACGCTATG TAAAAAAGAT GGCCAAGAGC CAGGACTATT TCTTCCAACA CTTTGCTCGC GCTCTGACCA TACTCTCTGA GAACAATCCT CTCACCGGTA CCAAGGGGGA AATCCGCAAA 
CAATGCTCTA TGGCCAATAA GCTCCATGGT GCCCAACGCT AA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGTTAAAGAC TTTAACCAAG ACTGAAGCAT AGTGGGAATC AGGATTCCTA TGCTTGGCTT GGAGTGCTGT CCGGCAGAAT CAGTAGTCGA TAAGCATTAA TGCAGTGCAC GCCCACCACA  TGTCCTATTT AACACCACCT CCATACCCAT CTCTGTGAAC GACCTACATT TCTCTTGGAA GTTCAAGTTT GGAGAATTAT GGGAGTCTGG AAGTTAGTCA TATTTTGTGT TCTGCTCGGC  TTGCAGACAT TGCGTGGGAA TGGTGATAAG CCTTCCTCTG ATGGGCTGGT TATGAATTTC TATGAGGACT CGTGTCCACA GGCGGAGGAT ATCATCAGAG AACAAGTGGG TTTGCTGTAC  AAGAAGCACA AGAACACTGC CTTCTCATGG CTCAGAAACA TCTTCCACGA TTGCTTTGTG GAGTCATGCG ATGCATCGCT TCTGCTGGAC TCGACGAGGA AGAGCATGTC TGAGAAGGAG  ACGGACAGAA GCTTTGGGCT TCGGAACTTC AGGTATCTGG ACACCATCAA GGAAGCTGTG GAGAGGGAGT GCCCCGGAGT TGTGTCCTGC GCAGACATCC TCGTTCTGTC CTCCAGAGAT  GGAGTCGTCT CGTTGGGAGG GCCGTTTATA CCACTCAAAA CAGGGCGAAG GGATGGGCGG AAGAGCAGAG CCAATGTGGT GGAAGACCAC CTTCCCGACC ACAACGAAAG CATCTCCACG  GTGCTTTCTC GCTTCCAGGC CATCGGAATC GACACTCCTG GCGTGGTTGC TTTGTTGGGG GCTCACAGCG TGGGAAGGAC ACACTGTGTG AAACTGGTGC ACAGGCTGTA CCCAGAGGTG  GACCCAACGC TGGATGCCGC CCACGCGGAT TACATGAAGT GGAAGTGCCC AGACGCCATT CCAAACCCCA AGGCAGTGCA ATACGTGAGG AACGACAGAG GCACGCCCAT GAAGCTGGAC  AACAACTACT ACCGGAATCT CATGGAAAAC AAGGGCCTTC TGATCGTCGA TCAGCAGCTG TATGACGACC CGAGGACCAA ACGCTATGTA AAAAAGATGG CCAAGAGCCA GGACTATTTC  TTCCAACACT TTGCTCGCGC TCTGACCATA CTCTCTGAGA ACAATCCTCT CACCGGTACC AAGGGGGAAA TCCGCAAACA ATGCTCTATG GCCAATAAGC TCCATGGTGC CCAACGCTAA 
CGATACCGCC TTTTATTCTC GCTTTTATCT ATATAATC 

Retrieve as FASTA