Entry information : AtrPrx03(AmTr_v1.0_scaffold00046.90)
Entry ID 1203
Creation 2005-06-13 (Christophe Dunand)
Last sequence changes 2005-06-13 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-11-09 (Christophe Dunand)
Peroxidase information: AtrPrx03(AmTr_v1.0_scaffold00046.90)
Name AtrPrx03(AmTr_v1.0_scaffold00046.90)
Class Class III peroxidase    [Orthogroup: Prx027]
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type Flower buds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx03
start..stop
S start..stop
GbPrx04 430 1e-152 5..327 7..329
PtPrx17 430 2e-152 30..327 35..337
VvPrx19 424 2e-150 30..327 32..333
InPrx02 423 8e-150 5..327 8..334
Literature and cross-references AtrPrx03(AmTr_v1.0_scaffold00046.90)
Literature dePamphilis,C., Soltis,D., Soltis,P., Farmerie,W., Ma,H., Tanksley,S., Leebens-Mack,J., Field,D., Buzgo,M., Kim,S., Ilut,D., Landherr,L., Hu,Y., Wall,K., Albert,V., Carlson,J., Doyle,J., Frohlich,M., Miller,W., Oppenheimer,D. and Theissen,G.
unpublished (2002)
EST ref. GenBank:   CD483197
Protein sequence: AtrPrx03(AmTr_v1.0_scaffold00046.90)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   327 (313)
PWM (Da):   %s   34555.88 (33403.4) Transmb domain:   %s   i2-24o
PI (pH):   %s   4.57 (4.57) Peptide Signal:   %s   cut: 23 range:23-335
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGYSLLMVVV AGWAVGLTGA CLVGGGAGGG SLLRENAYET SCPDAESIVF SWVENAAAQD PRMAASLLRL HFHDCFVNGC DASVLLDDTA TFVGEKSAAP NVNSLRGFEV IDGIKGDLEM  ACPQTVSCAD ILAMAARDSV LLSGGPTWQV QLGRKDSLTA SKAAANNNIP GPNSNVANLV SKFQNVGLTP QDMVTLSGAH TIGMARCSTF RSRLQSNSGD DVDREFLASL QQLCSVNSNM 
TLAVLDVGTP AVFDNEYYAN LASGQGLLSS DQALFAEGGI TREVVENYAS DTEFFFKNFR MSMLRMGAIK PLTGSSGEIR RNCRSIN* 

Retrieve as FASTA  
Remarks Complete sequence from 7 EST. From early (male and female) flower buds . Assembly was performed by the PeroxiBase team. Accession are : CD483197, CV000584, CV003026, CV459429, CD483319, CO999010 and CV006807. STOP codon is not clearly defined, and is given differently in two accessions (CV000584 gives the extra sequence LIYSICFLVVSLSL; CD483319 does not).
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGGTATA GTCTACTAAT GGTGGTGGTG GCGGGTTGGG CAGTGGGCTT AACAGGAGCT TGCTTAGTGG GTGGAGGTGC AGGTGGAGGT TCTTTGCTGA GAGAGAATGC CTACGAGACG  AGCTGCCCTG ATGCTGAGTC CATAGTATTT TCATGGGTGG AGAATGCTGC GGCCCAAGAC CCTCGCATGG CGGCCTCCCT TCTCCGCCTC CACTTCCATG ACTGCTTCGT AAATGGTTGC  GACGCGTCGG TGCTGTTGGA TGACACTGCA ACATTTGTTG GGGAGAAGAG TGCAGCTCCA AATGTGAACT CATTGAGGGG TTTTGAGGTG ATCGATGGGA TCAAGGGTGA CCTCGAAATG  GCTTGCCCTC AGACTGTGTC TTGTGCTGAT ATCTTGGCCA TGGCTGCTCG TGACTCTGTA CTCCTTTCGG GTGGGCCCAC ATGGCAAGTC CAGCTAGGAC GGAAGGATAG TTTGACTGCC  AGCAAGGCTG CGGCGAACAA CAACATACCG GGCCCTAATT CCAACGTGGC GAACCTTGTG TCTAAGTTTC AAAATGTGGG CCTCACTCCC CAGGACATGG TCACACTCTC AGGTGCACAC  ACCATAGGCA TGGCTCGGTG CTCGACCTTT CGCTCTCGTC TTCAAAGCAA CTCGGGAGAT GATGTGGATA GAGAATTCTT GGCTTCACTG CAACAATTGT GCTCGGTGAA CAGCAACATG  ACATTAGCCG TGCTTGATGT GGGAACACCA GCAGTCTTTG ACAACGAATA TTATGCTAAC CTGGCGTCTG GCCAAGGGTT GTTGAGTTCA GATCAAGCCC TTTTTGCTGA GGGTGGAATA  ACCCGTGAGG TGGTGGAGAA TTATGCTAGT GATACCGAGT TCTTCTTCAA AAACTTCAGG ATGTCCATGC TTAGGATGGG TGCTATCAAG CCTCTCACTG GTTCTAGTGG CGAGATTCGA 
CGCAACTGCA GATCCATCAA CTGA 

Retrieve as FASTA