Entry information : AtrPrx05(AmTr_v1.0_scaffold00007.230)
Entry ID 1205
Creation 2006-10-09 (Christophe Dunand)
Last sequence changes 2006-10-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-11-10 (Christophe Dunand)
Peroxidase information: AtrPrx05(AmTr_v1.0_scaffold00007.230)
Name AtrPrx05(AmTr_v1.0_scaffold00007.230)
Class Class III peroxidase     [Orthogroup: Prx008]*
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type Flower buds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx05
start..stop
S start..stop
AtrPrx12 640 0 1..318 1..318
VvPrx76 493 1e-177 8..318 11..321
CpapPrx19 491 4e-177 4..318 9..323
GmPrx158 486 3e-175 1..318 1..320
Literature and cross-references AtrPrx05(AmTr_v1.0_scaffold00007.230)
Literature dePamphilis,C., Soltis,D., Soltis,P., Farmerie,W., Ma,H., Tanksley,S., Leebens-Mack,J., Field,D., Buzgo,M., Kim,S., Ilut,D., Landherr,L., Hu,Y., Wall,K., Albert,V., Carlson,J., Doyle,J., Frohlich,M., Miller,W., Oppenheimer,D. and Theissen,G.
unpublished (2002)
EST ref. GenBank:   CV006668 [Fragment]
Protein sequence: AtrPrx05(AmTr_v1.0_scaffold00007.230)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (199)
PWM (Da):   %s   34423.46 (21322.9)  
PI (pH):   %s   9.59 (9.34) Peptide Signal:   %s   cut: 22 range:22-220
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MASSSLSVRL AFVLLLTWSS YAQLTPHYYA YSCPKALPTI RSAVKSAISN DKRVGAQLLR LFFHDCFVNG CDGSLLLDDT STFIGEKNAA PNRNSARGFN IVDNIKSAVE KACPGVVSCA  DTLAVAARDS VVLLGGPDWQ VKLGRRDART ASQAAANNSI PPPTFNLNQL INSFANQGLS QKDMVALSGG HTIGVARCIN IRNRIYNETN IDPSFAKTRQ SNCPRTAGSG DNNVNPLDLQ 
TPTAFDNKYF KNLINKKGLL HSDQQLFNGG SSDSLVRSYS SNSDLFDKDF VAAMIKMGDI KPLTGSNGEI RKNCRKIN* 

Retrieve as FASTA  
Remarks complete sequence from genomic and 1 EST sequence (early male flower buds), 5’ and 3’ ends are missing.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTCTT CCTCTCTGTC TGTTAGACTT GCATTCGTTT TGCTCCTCAC TTGGAGCTCG TATGCCCAAC TCACCCCACA CTACTATGCT TACTCTTGCC CCAAGGCACT GCCCACCATT  AGATCAGCTG TTAAATCAGC CATCTCAAAT GACAAGAGAG TTGGAGCTCA GCTTCTTCGC CTTTTCTTCC ATGACTGCTT TGTGAATGGG TGCGATGGAT CGTTGCTTCT GGATGATACG  TCCACCTTCA TTGGAGAGAA GAACGCAGCA CCAAACAGGA ACTCGGCGAG AGGGTTCAAT ATTGTGGACA ATATAAAATC TGCGGTGGAG AAGGCGTGCC CTGGGGTCGT CTCATGTGCT  GATACCTTGG CCGTCGCTGC AAGAGACTCC GTTGTCTTGT TGGGAGGACC GGATTGGCAA GTGAAATTGG GAAGGAGGGA CGCGAGGACA GCGAGCCAGG CCGCTGCAAA CAACAGCATC  CCACCTCCGA CCTTCAACCT CAATCAGCTC ATCAACAGTT TCGCTAATCA AGGCCTATCT CAAAAGGACA TGGTTGCCCT CTCCGGAGGC CACACCATTG GCGTTGCTCG CTGCATTAAC  ATCAGGAACC GCATCTACAA TGAGACCAAT ATCGACCCTT CATTTGCCAA GACTCGGCAA TCCAACTGCC CAAGGACCGC GGGCTCAGGA GACAACAATG TGAACCCTCT GGACCTTCAA  ACCCCAACTG CCTTTGACAA CAAGTATTTC AAGAACCTGA TTAACAAGAA GGGCCTTCTC CACTCTGATC AGCAGCTCTT CAATGGTGGC TCCTCCGATT CTCTTGTTCG AAGCTACAGC 
TCCAATTCAG ACTTGTTTGA TAAGGACTTT GTGGCTGCCA TGATCAAGAT GGGTGACATC AAACCCCTCA CTGGCTCTAA TGGAGAGATT CGCAAGAATT GTAGAAAGAT CAACTAA 

Retrieve as FASTA