Entry information : LuGPx46(Lus10008499|PACid:23177406)
Entry ID 12054
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuGPx46(Lus10008499|PACid:23177406)
Name LuGPx46(Lus10008499|PACid:23177406)
Class Plant glutathione peroxidase    [Orthogroup: Gpx2001]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuGPx46
start..stop
S start..stop
LuGPx220 454 5e-165 1..236 1..238
PtGPx06-2 323 2e-113 1..236 1..238
LuGPx40 320 2e-113 68..236 1..169
ThasGPx06-2 315 5e-110 42..235 51..239
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 127174..127425 252 N° 2 127018..127094 77 N° 3 126884..126945 62 N° 4 126493..126611 119
N° 5 126107..126274 168 N° 6 125987..126019 33  
complement(join(125987..126019,126107..126274,126493..126611,126884..126945,1270 18..127094,127174..127425))


exon

Literature and cross-references LuGPx46(Lus10008499|PACid:23177406)
DNA ref. Phytozome 11:   scaffold835 (127425..125987)
Protein sequence: LuGPx46(Lus10008499|PACid:23177406)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   237
PWM (Da):   %s   26120.43  
PI (pH):   %s   9.72
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLCSSIRNLSRKNLIFTASSASSLLRTGPLRSISSLGLYYSRLPRRRSVSLKQCPGLVACSARFDRAMASNSEAPQSIYDFTVKDARGNDVDLSTYKGKVLLIVNVASQCGLTNSNYTELTELYKKYKDGLEILAFPCNQFGSQEPGSNEQIMEFACTRFKAEYPIFDVDVNGNNAAPIYKFLKSSKGGLFGDGIKWNFAKFLINKEGQVVDRYAPTTSPLSFEKDVKKLLGVA*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Correct prediction.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTCTGTTCTTCAATCCGCAATCTCTCCCGTAAAAATCTCATCTTTACAGCCTCATCCGCTTCTTCTCTTCTTCGCACCGGACCTCTCCGATCGATTTCTTCTCTGGGTTTGTACTAT
TCTCGTCTTCCGCGTCGGCGATCAGTTTCCTTGAAGCAGTGCCCCGGTTTGGTTGCTTGTTCTGCCAGATTCGATCGAGCTATGGCCAGCAACTCCGAAGCTCCTCAGTCCATTTACGAC
TTCACTGTCAAG
GTATAAATAAAGTTGGGGGTTTCCTTGTATTGGATTGAAATTATTGGTTGGCTGAATTTTGGATTCTGGTTGTTTGCAGGACGCTAGAGGGAATGATGTTGATCTCAG
TACTTACAAGGGCAAAGTTCTTTTGATTGTCAATGTCGCCTCCCAATG
GTAAATTTCCCAACTTTATTTCACTAAGGGGTTAGTTATGTATCGAACATGAAAATTTACTGTTTGTTGCAG

TGGCTTGACCAATTCGAATTACACTGAGCTGACTGAGCTGTACAAGAAGTACAAAGATCAAG
GTTTTCCTCTTCGCCCAGTTTCTTTGTGTTTGATTGTGATTAGTGACATAAGAGAATA
TTCAATCCTTGGCTTGTGTGCATAAATGTTGTGGCTAATGGTCTTCTGAAGCAGATTATTGAGCTTATTCATTACAAGTACTGTATTCATTCTTGGCCTTCAAGTAGAAGTGTAGTGGGA
AATTATCTGTAATCTATTTGATCTCAGTCTAAGCTCAGTGGTCTACGTTTGTGATGACTAGTAACTCATTTTCCCCACTCGTTGCCTGGAGCAGGTCTAGAGATCTTGGCTTTCCCTTGC
AATCAGTTTGGATCTCAGGAGCCTGGCAGCAACGAGCAAATCATGGAGTTTGCTTGTACTCGCTTCAAGGCCGAGTATCCCATTTTCGACAAG
GTGAGGTTCGGAGGTCAACTATACAAT
TAAACATGATCTAGACTAGAGACTCTACAAACCAATTCTTTTAGTTGTGGTGTTATGAATTACTCAAGACATCAATTAACCTTATGAATACCGATATCCTTAAATCGACTAAAGACTCCA
CGACGATGTCCTTACCTTGTAGTAGAATTCAAATTGATGATGGTTTGTTTTTGTTTTTAACACTAATACAGGTTGATGTGAACGGTAACAATGCTGCTCCAATCTACAAGTTCCTCAAGT
CAAGCAAAGGTGGCCTCTTTGGGGATGGTATCAAGTGGAACTTTGCCAAGTTCCTCATCAACAAAGAGGGGCAGGTGGTTGATCGATACGCTCCTACTACCTCCCCTCTCAGCTTCGAG
G
TACATCCGAGTTATGTTTCATTTTCGATTCTCCTGATCGATGACTAACTCTGACCATGTATATATTTCCTTTGGTAAAATTTGCAGAAAGATGTGAAGAAACTGCTTGGGGTTGCCTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTCTGTTCTTCAATCCGCAATCTCTCCCGTAAAAATCTCATCTTTACAGCCTCATCCGCTTCTTCTCTTCTTCGCACCGGACCTCTCCGATCGATTTCTTCTCTGGGTTTGTACTAT
TCTCGTCTTCCGCGTCGGCGATCAGTTTCCTTGAAGCAGTGCCCCGGTTTGGTTGCTTGTTCTGCCAGATTCGATCGAGCTATGGCCAGCAACTCCGAAGCTCCTCAGTCCATTTACGAC
TTCACTGTCAAG
GACGCTAGAGGGAATGATGTTGATCTCAGTACTTACAAGGGCAAAGTTCTTTTGATTGTCAATGTCGCCTCCCAATGTGGCTTGACCAATTCGAATTACACTGAGCTG
ACTGAGCTGTACAAGAAGTACAAAGATCAAG
GTCTAGAGATCTTGGCTTTCCCTTGCAATCAGTTTGGATCTCAGGAGCCTGGCAGCAACGAGCAAATCATGGAGTTTGCTTGTACTCGC
TTCAAGGCCGAGTATCCCATTTTCGACAAG
GTTGATGTGAACGGTAACAATGCTGCTCCAATCTACAAGTTCCTCAAGTCAAGCAAAGGTGGCCTCTTTGGGGATGGTATCAAGTGGAAC
TTTGCCAAGTTCCTCATCAACAAAGAGGGGCAGGTGGTTGATCGATACGCTCCTACTACCTCCCCTCTCAGCTTCGAG
AAAGATGTGAAGAAACTGCTTGGGGTTGCCTGA

Retrieve as FASTA