Entry information : AtrPrx07(AmTr_v1.0_scaffold00045.54)
Entry ID 1207
Creation 2005-06-13 (Christophe Dunand)
Last sequence changes 2005-06-13 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-11-12 (Christophe Dunand)
Peroxidase information: AtrPrx07(AmTr_v1.0_scaffold00045.54)
Name AtrPrx07(AmTr_v1.0_scaffold00045.54)
Class Class III peroxidase     [Orthogroup: Prx002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type Flower buds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx07
start..stop
S start..stop
AtrPrx11 551 0 1..349 1..348
PtPrx89 402 3e-141 10..327 14..329
PatrPrx10 398 9e-140 2..327 4..329
SiPrx03 398 2e-139 5..335 7..340
Literature and cross-references AtrPrx07(AmTr_v1.0_scaffold00045.54)
Literature dePamphilis,C., Carlson,J., Ma,H., Soltis,D., Soltis,P.,Oppenheimer,D., Frohlich,M., Doyle,J., Tanksley,S., Webb,M., Leebens-Mack,J., Landherr,L., Ilut,D. and Wall,K.
unpublished (2003)
EST ref. GenBank:   CV002753 [5' end]   CO998143 [3' end]
Protein sequence: AtrPrx07(AmTr_v1.0_scaffold00045.54)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   349
PWM (Da):   %s   37116.03  
PI (pH):   %s   4.01
Sequence
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Send to Peroxiscan
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MSPSFRTLCL LLVGVIIPVL VNGALEVGFY NETCPQAEQL IFDAVSTAVT ANPGIAAGLI RMYFHDCFVR GCDGSVLLDS TADNQAEKDS PVNNPSLRGF EVIDEAKAAI ETVCPNTVSC  ADVLAFAARD STSLTGGLNY TLPAGRRDGN VSIANETFSN LPPPSFNVTQ LVDNFAIKNL TLEEMVTLSG GHTIGRSHCT SFVSRLYNFS STSQVDPTLD ADYAATLQSL CPFNASTNNE 
TTVPMDVFTP DDLDVNYYVG VTQNFGLFTS DQTLLTNDST SALVEENIGS PDVWQARFAA AMIKMGDIEV LTGTDGEIRT NCRVVNSASS ASLIDTFGSS SSYSKVASS* 

Retrieve as FASTA  
Remarks Complete sequence from genomic and 3 EST (accessions CO998143, CO996980 and CO999830, 5' end is missing). Assembly by PeroxiBase team. From early female flower buds
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCTCCTA GTTTTAGGAC CTTATGTTTG CTCCTGGTGG GGGTGATCAT ACCTGTGCTA GTAAATGGTG CCCTAGAAGT TGGCTTTTAT AATGAGACAT GTCCACAAGC TGAGCAACTG  ATTTTCGATG CTGTGTCTAC GGCTGTAACT GCAAATCCTG GCATTGCTGC TGGATTGATA AGGATGTATT TCCACGACTG CTTTGTGAGA GGGTGCGACG GGTCCGTGCT GCTAGACTCG  ACCGCGGATA ACCAAGCCGA GAAGGATTCA CCTGTGAACA ACCCGAGTCT TCGTGGTTTT GAAGTGATCG ACGAGGCCAA GGCTGCCATC GAGACCGTGT GCCCCAACAC AGTATCATGC  GCCGACGTCC TAGCCTTTGC TGCAAGGGAC AGCACCTCGC TCACAGGCGG CCTCAACTAC ACTCTCCCTG CAGGCAGGCG TGATGGCAAT GTATCGATCG CAAATGAAAC CTTCTCAAAC  CTCCCCCCTC CATCTTTCAA TGTCACTCAA CTCGTCGACA ATTTCGCTAT AAAGAATCTC ACCTTGGAGG AGATGGTCAC TCTCTCTGGC GGCCACACCA TTGGCCGGTC TCATTGCACC  TCGTTCGTCA GCCGCTTATA TAACTTTAGC TCAACCAGTC AAGTCGATCC GACTCTGGAC GCAGACTACG CCGCCACTCT GCAAAGTCTG TGCCCTTTCA ATGCTTCTAC GAACAATGAA  ACCACAGTTC CAATGGATGT GTTTACACCA GATGATTTGG ATGTGAATTA CTACGTTGGG GTGACCCAAA ATTTCGGGTT GTTCACTTCG GATCAAACAC TTTTGACCAA CGATTCGACA  AGCGCTCTCG TCGAGGAGAA TATAGGGAGC CCAGATGTGT GGCAAGCGAG GTTTGCAGCG GCCATGATTA AGATGGGGGA CATTGAGGTT CTCACTGGAA CTGATGGGGA GATCAGGACT 
AATTGCAGGG TTGTCAACAG TGCCTCATCT GCTTCTCTTA TTGACACTTT CGGGTCTTCT TCTTCCTATT CGAAGGTGGC AAGTAGCTGA 

Retrieve as FASTA