Entry information : AtrPrx09(AmTr_v1.0_scaffold00003.340)
Entry ID 1209
Creation 2008-06-19 (Christophe Dunand)
Last sequence changes 2008-06-19 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-11-09 (Christophe Dunand)
Peroxidase information: AtrPrx09(AmTr_v1.0_scaffold00003.340)
Name AtrPrx09(AmTr_v1.0_scaffold00003.340)
Class Class III peroxidase     [Orthogroup: Prx001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type Flower buds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx09
start..stop
S start..stop
NnPrx01 580 0 1..335 1..331
TcPrx18 579 0 1..335 1..329
GaPrx01 578 0 1..335 5..332
GhPrx36 578 0 1..335 5..332
Literature and cross-references AtrPrx09(AmTr_v1.0_scaffold00003.340)
Literature dePamphilis,C., Carlson,J., Ma,H., Soltis,D., Soltis,P.,Oppenheimer,D., Frohlich,M., Doyle,J., Tanksley,S., Webb,M., Leebens-Mack,J., Landherr,L., Ilut,D. and Wall,K.
unpublished (2003)
mRNA ref. GenBank:   FD443036 [Fragment]
EST ref. GenBank:   FD439765 [5' end]   CK756795 [3' end]
Protein sequence: AtrPrx09(AmTr_v1.0_scaffold00003.340)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   336 (318)
PWM (Da):   %s   37857.27 (35835.2)  
PI (pH):   %s   7.81 (8.02) Peptide Signal:   %s   cut: 18 range:18-335
Sequence
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Send to Peroxiscan
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MGSFSLLFFT VFLSLVAASK LYNNGVSAEE SADTGLMMNY YTDSCPQAED VIREQVKLLY KRHKNTAFSW LRNIFHDCAV QSCDASLLLD STRRSLSEKE TDRSFGLRNF RYLDTIKEAV  ERECPGVVSC ADILVLSARD GIVALGGPYI PLKTGRRDGR RSRAEVLEEY LPDHNESISG VLAKFEAIGI DTPGVVALLG AHSVGRTHCV KLVHRLYPEV DPALNPDHVE HMLHKCPDPI 
PNPKAVQYVR NDRGTPMILD NNYYRNVMEG KGLLQVDHQL YEDKRTRFFV KKMAKSQDYF FKEFARAITI LSENNPLTGT KGEIRAVCNV ANKHHL* 

Retrieve as FASTA  
Remarks Complete sequence from genomic and 5 ESTs.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGTTCCT TCTCACTCCT CTTTTTCACA GTCTTCCTGT CACTTGTAGC AGCTTCTAAA CTGTACAACA ATGGCGTCTC GGCAGAAGAG TCTGCTGATA CTGGTCTTAT GATGAATTAC  TACACGGACT CATGCCCCCA AGCTGAAGAC GTCATTAGAG AGCAAGTGAA GCTCCTCTAC AAGCGCCACA AGAACACTGC ATTCTCCTGG CTCAGGAACA TCTTCCATGA CTGTGCTGTT  CAGTCGTGTG ATGCTTCTCT TCTGTTGGAT TCGACGAGGA GGAGCCTGTC GGAGAAGGAG ACGGATCGGA GCTTTGGGCT GAGGAACTTC AGGTATTTGG ACACCATCAA AGAGGCTGTT  GAGAGAGAGT GCCCCGGAGT CGTTTCTTGT GCAGACATCC TCGTCTTGTC GGCCAGAGAT GGCATTGTTG CGTTGGGTGG TCCATATATC CCCCTGAAAA CGGGGAGGAG AGACGGGAGG  AGGAGCCGAG CGGAGGTGTT GGAGGAATAC CTGCCTGACC ACAACGAGAG CATCTCCGGT GTTCTCGCCA AGTTCGAAGC CATCGGCATC GACACCCCCG GCGTCGTCGC ACTCCTAGGT  GCGCACAGCG TGGGCCGCAC CCACTGCGTG AAGCTGGTGC ACCGGCTGTA CCCAGAGGTG GACCCTGCCC TGAACCCAGA CCACGTCGAG CACATGCTCC ACAAGTGCCC CGACCCCATC  CCCAACCCGA AAGCCGTGCA GTACGTCCGC AACGACAGAG GCACGCCCAT GATCCTCGAC AACAACTACT ACCGCAACGT TATGGAGGGC AAGGGGCTCT TGCAGGTGGA CCACCAGTTG  TACGAAGACA AGCGCACCAG GTTCTTCGTC AAGAAGATGG CAAAGAGCCA GGACTACTTC TTCAAGGAGT TCGCTCGTGC CATCACCATC CTCTCCGAAA ACAACCCGCT GACCGGCACC 
AAGGGTGAGA TACGCGCCGT GTGCAACGTT GCTAACAAGC ACCACCTCTA A 

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