Entry information : CruPrx04
Entry ID 1218
Creation 2008-09-05 (Christophe Dunand)
Last sequence changes 2008-09-05 (Christophe Dunand)
Sequence status partial
Reviewer Catherine Mathe
Last annotation changes 2010-06-03 (Catherine Mathe)
Peroxidase information: CruPrx04
Name CruPrx04
Class Class III peroxidase     [Orthogroup: Prx007]*
Taxonomy Eukaryota Viridiplantae Streptophyta Cycadaceae Cycas
Organism Cycas rumphii    [TaxId: 58031 ]
Cellular localisation N/D
Tissue types Leaves
Sporophyll
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CruPrx04
start..stop
S start..stop
CjPrx02 454 3e-162 5..296 6..296
PtaPrx42 439 2e-156 2..295 5..295
PabPrx02 433 5e-154 2..295 3..293
GbPrx03 398 6e-140 33..295 37..299
Literature and cross-references CruPrx04
Literature Brenner,E.D., Katari,M.S., Dedhia,N.N., O'Shaughnessy,A.L., Balija ,V., Martienssen,R.A., McCombie,R.W., Benfey,P., Coruzzi,G. and Stevenson,D. npublished (2003)
EST ref. GenBank:   DR061804 [5' end]   CB090049 [Fragment]
Protein sequence: CruPrx04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   297 (276)
PWM (Da):   %s   31786.09 (29551.9)  
PI (pH):   %s   6.65 (6.34) Peptide Signal:   %s   cut: 22 range:22-297
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MKQLIVVLFC VLSALFPCGT AENGFDNTDS LSSVADGLSW TFYQKTCPSL EKIVKQRINF YLKQDITQAA GLLRLHFHDC FVQGCDGSVL LDGSASGPGE QSAPPNLTLR PKAFQIINDI  KEHVDKACGV VVSCADITAL AARDSVAGAG GPEYRVPLGR RDSLNFATRA VTLANLPAPT SSAALLLANL SARGLDATDL VALSGGHTIG IGHCSSFTNR LYPTQDATLN ASFAKGLYST 
CPSQNSTNTT VLDIRTPNLF DNKYYVDLKN REGLFTSDQD LYTNTRTKPI VESFARS 

Retrieve as FASTA  
Remarks Partial sequence from 4 ESTs. Short 3' sequence is missing. Frame:1[46-939] on contig.
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGGATCCAAA GGTCGAACTG CGTGTTTGTA AATCATATCG ATACGATGAA GCAGCTTATT GTCGTTTTGT TTTGCGTTCT CTCGGCTTTG TTTCCCTGCG GAACGGCCGA GAATGGTTTT  GACAACACAG ACTCTCTGTC ATCCGTGGCA GACGGACTCT CATGGACATT TTACCAAAAA ACGTGTCCGT CCTTGGAGAA AATTGTGAAG CAAAGGATTA ACTTCTACTT GAAGCAGGAC  ATCACGCAGG CTGCCGGATT GCTGCGCCTC CACTTCCACG ATTGTTTCGT CCAGGGTTGC GACGGGTCGG TACTGCTGGA CGGGTCGGCG AGCGGGCCGG GCGAGCAATC TGCGCCGCCC  AATTTAACCC TGCGACCCAA AGCCTTCCAA ATTATAAACG ACATAAAGGA ACACGTGGAC AAGGCGTGTG GCGTGGTCGT GTCCTGTGCG GATATCACCG CTCTGGCTGC CCGCGACTCG  GTGGCAGGGG CCGGAGGACC AGAGTACAGG GTTCCGCTGG GGCGCCGGGA CAGCCTCAAC TTCGCCACCA GAGCAGTAAC TCTGGCCAAC CTGCCAGCAC CTACTTCCAG TGCCGCACTT  CTCCTCGCTA ATTTGTCCGC CAGAGGCCTC GACGCCACAG ATCTCGTTGC TCTGTCAGGT GGACACACCA TCGGTATCGG TCACTGCTCC TCGTTTACGA ATCGGCTCTA CCCCACGCAG  GACGCTACGT TGAACGCAAG TTTTGCGAAA GGTCTGTACA GCACCTGCCC GTCCCAAAAC TCCACCAACA CCACCGTGCT GGACATCCGC ACCCCCAACT TGTTCGACAA CAAGTATTAC 
GTGGACCTTA AGAACAGGGA GGGACTGTTC ACGTCGGACC AGGATCTGTA CACCAACACC CGCACCAAGC CCATTGTGGA GAGCTTCGCT CGTAGTC 

Retrieve as FASTA