Entry information : LuPrxII83(Lus10015077|PACid:23171510)
Entry ID 12195
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuPrxII83(Lus10015077|PACid:23171510)
Name LuPrxII83(Lus10015077|PACid:23171510)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrxII83
start..stop
S start..stop
LuPrxII124 328 9e-118 1..164 1..164
LuPrxII125 312 2e-111 1..164 1..164
CclPrxII02 284 2e-100 1..162 1..162
CsPrxII02 284 3e-100 1..162 1..162
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 410822..410976 155 N° 2 410652..410731 80 N° 3 409801..410060 260  
complement(join(409801..410060,410652..410731,410822..410976))


exon

Literature and cross-references LuPrxII83(Lus10015077|PACid:23171510)
DNA ref. Phytozome 11:   scaffold54 (410976..409801)
Protein sequence: LuPrxII83(Lus10015077|PACid:23171510)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   165
PWM (Da):   %s   17411.18  
PI (pH):   %s   6
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAPIAAGASLPDGTLAHFDENDQLQQVSIHSLAAGKKVVIVGVPGAFTPTCSLKHVPGFIERADDLKAKGVAEIITIVNDPFVMKAWAKTFPENKHVKFLADGSATYTHALGVELDLKEKGLGIRSRRFALLVDDLKVKAANIEDGGDFTVSSVDDIIKALDA

Retrieve as FASTA  
Remarks Complete sequence from genomic. Correct prediction.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCGATAGCTGCCGGTGCTTCCTTGCCTGACGGAACTCTCGCTCACTTCGACGAGAACGATCAGCTCCAGCAGGTCTCCATCCACTCCCTCGCCGCTGGCAAGAAGGTTGTCATC
GTCGGTGTTCCCGGCGCCTTCACTCCAACTTGCAG
GTCATTCACAATCTTCTCTCTGATTCTTTCATTTCTCGCAATTGTAGCAGGCGTTAATCGCTTCAAGTATGGTTGTCTGTTTGTA
CGCAGCTTGAAGCATGTACCTGGATTCATCGAGAGAGCGGATGACCTCAAAGCCAAAGGTGTTGCAGAGATAATCACTATTAGCGGTAGTTGCTCGATTCCCTCCCCTTCCCATTTGTTT
GACAATAATGATCTAATTCCGCTCTTCATTTTCCAGCTTACAAACTAGATTTCAATGTCCTGTTTGTTCAATTAGCAGAATTCCTTTGTGGCTTTGTACCGGCTGACTGCCCCCTTTGAT
CTTCGCTATATTTGATGAATTGGAATGAATTAGGGTTCCTAGCAAATATTGTAAAATTGAATTCCCCACAGCTATAAACGAGCGAAGAGAACACGCAGGTGCAAAACTCTAACCAAATGA
ATATATGACAGACTTGCTGATGATTTTGGATTGAGATTTAGTTCTTGGTTCTGAAAAGTGTATTCTTGAAAATGATGGTTATGAATGGTCCGTGCTTGAGTCATATATAGTGAAAATTCA
GTATTATATTCTACTGAATTCTTCGTCTTCCCTGCGGAAGCCATGGCCTGGATTTTGGTAAACAAACATGATATTGAGTTTTGGGATTCGTGGAAAGAAGTTAAAAGGCAAAAGTTGCTC
TCCATTTTAATTGGAAGATATGGACATGTCCTGACAATCTGACATGGTGATTTGGATAAACTATCTCTATCTGCAGTGAATGATCCATTTGTGATGAAAGCTTGGGCAAAGACCTTCCCA
GAGAACAAGCACGTGAAGTTCTTGGCAGATGGCTCTGCAACTTACACCCATGCTCTGGGTGTTGAGCTTGACCTAAAGGAGAAGGGACTAGGGATCAGATCAAGGAGGTTTGCTCTACTG
GTCGATGACCTCAAGGTGAAGGCTGCAAACATTGAAGATGGTGGAGACTTCACAGTTTCGAGTGTTGATGATATCATCAAGGCCCTTGATGCTTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTCCGATAGCTGCCGGTGCTTCCTTGCCTGACGGAACTCTCGCTCACTTCGACGAGAACGATCAGCTCCAGCAGGTCTCCATCCACTCCCTCGCCGCTGGCAAGAAGGTTGTCATC
GTCGGTGTTCCCGGCGCCTTCACTCCAACTTGCAG
CTTGAAGCATGTACCTGGATTCATCGAGAGAGCGGATGACCTCAAAGCCAAAGGTGTTGCAGAGATAATCACTATTAGCGTGAAT
GATCCATTTGTGATGAAAGCTTGGGCAAAGACCTTCCCAGAGAACAAGCACGTGAAGTTCTTGGCAGATGGCTCTGCAACTTACACCCATGCTCTGGGTGTTGAGCTTGACCTAAAGGAG
AAGGGACTAGGGATCAGATCAAGGAGGTTTGCTCTACTGGTCGATGACCTCAAGGTGAAGGCTGCAAACATTGAAGATGGTGGAGACTTCACAGTTTCGAGTGTTGATGATATCATCAAG
GCCCTTGATGCTTGA

Retrieve as FASTA