Entry information : GbAPx02 (SGTW-2038613 / gba_locus_2106_iso_7_len_1887_ver_2)
Entry ID 12511
Creation 2013-10-31 (Christophe Dunand)
Last sequence changes 2013-10-31 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbAPx02 (SGTW-2038613 / gba_locus_2106_iso_7_len_1887_ver_2)
Name (synonym) GbAPx02 (SGTW-2038613 / gba_locus_2106_iso_7_len_1887_ver_2)
Class Ascorbate peroxidase    [Orthogroup: APx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbAPx02
start..stop
S start..stop
PgAPx02 443 3e-160 1..250 1..250
PabAPx87 443 3e-160 1..250 1..250
PtaAPx02 442 6e-160 1..250 1..250
CruAPx01 441 2e-159 1..248 1..248
Literature and cross-references GbAPx02 (SGTW-2038613 / gba_locus_2106_iso_7_len_1887_ver_2)
mRNA ref. GenBank:   GU084140.1
EST ref. GenBank:   GE649756.1 [5' end]   EX932504.1 [3' end]
Protein sequence: GbAPx02 (SGTW-2038613 / gba_locus_2106_iso_7_len_1887_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   250
PWM (Da):   %s   27556.93  
PI (pH):   %s   5.35
Sequence
Send to BLAST
Send to Peroxiscan
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MGKSYPTVSD EYKVAVEKCR RKLRGLIAEK HCAPIIVRLA WHGAGTYDVK TKTGGPFGTI RHPDELAHAA NKGLDIAIGL LDPIKGQFPI LSYADFYQLA GVVAIEITGG PTIPFHPGRE  DTHEPPEEGR LTDATKGVDH LRDVFGHMGL SDQDIVALSG AHTLGRCHKE RSGFEGPWTF NPLIFDNSYF KELLTGEKEG LIQLPADKAL LEEPIFYSYV EKYAQDEDAF FADYTESHLK 
LSELGFAEEE 

Retrieve as FASTA  
Remarks Complete sequence from mRNA and ESTs. gba_locus_10616_iso_1_len_296_ver_2 (short 5' end), gba_locus_6900_iso_2_len_468_ver_2 (fragment with mismatches), gba_locus_2106_iso_7_len_1887_ver_2 (3'end)
CDS
Send to BLAST
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ATGGGCAAGA GTTATCCTAC CGTTAGTGAC GAGTACAAGG TTGCTGTGGA GAAATGCAGG AGAAAGCTTC GGGGTCTTAT TGCAGAGAAG CACTGTGCAC CAATAATCGT CCGTCTGGCA  TGGCATGGGG CTGGAACCTA CGACGTTAAG ACCAAAACAG GAGGTCCATT TGGAACAATT AGGCACCCTG ACGAGCTTGC CCACGCAGCC AACAAGGGTT TGGACATTGC CATCGGACTG  TTGGACCCGA TCAAGGGGCA ATTTCCCATT TTGTCATATG CTGACTTCTA TCAGTTGGCA GGTGTCGTTG CCATTGAGAT TACTGGAGGA CCAACTATTC CTTTCCATCC TGGAAGAGAG  GACACGCATG AGCCTCCTGA GGAAGGTCGT CTGACAGATG CAACTAAAGG GGTTGACCAT CTGAGAGATG TCTTCGGGCA CATGGGTCTG AGTGACCAGG ACATTGTGGC TCTCTCCGGT  GCCCACACCT TGGGTAGATG CCATAAGGAG CGTTCTGGAT TTGAGGGCCC ATGGACCTTC AACCCTCTGA TTTTTGACAA CTCTTACTTC AAGGAGCTTC TAACAGGAGA GAAAGAAGGT  TTGATTCAGC TGCCTGCTGA TAAGGCACTG TTAGAGGAAC CCATTTTCTA TTCCTATGTT GAGAAGTATG CACAGGATGA GGATGCCTTC TTCGCTGATT ATACAGAATC TCACTTGAAG 
CTATCAGAAC TTGGGTTTGC TGAGGAGGAG TAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CGAATTCTGG CATTTGTTCT CAAGATTTGT AGCTTAATTC CATGTTCTCT GGATATACTG GAGTCTGGAC GTGTGTTTAA TTCCAATTCG AGGACATTCT CAAGAAGAAA CAATGGGCAA  GAGTTATCCT ACCGTTAGTG ACGAGTACAA GGTTGCTGTG GAGAAATGCA GGAGAAAGCT TCGGGGTCTT ATTGCAGAGA AGCACTGTGC ACCAATAATC GTCCGTCTGG CATGGCATGG  GGCTGGAACC TACGACGTTA AGACCAAAAC AGGAGGTCCA TTTGGAACAA TTAGGCACCC TGACGAGCTT GCCCACGCAG CCAACAAGGG TTTGGACATT GCCATCGGAC TGTTGGACCC  GATCAAGGGG CAATTTCCCA TTTTGTCATA TGCTGACTTC TATCAGTTGG CAGGTGTCGT TGCCATTGAG ATTACTGGAG GACCAACTAT TCCTTTCCAT CCTGGAAGAG AGGACACGCA  TGAGCCTCCT GAGGAAGGTC GTCTGACAGA TGCAACTAAA GGGGTTGACC ATCTGAGAGA TGTCTTCGGG CACATGGGTC TGAGTGACCA GGACATTGTG GCTCTCTCCG GTGCCCACAC  CTTGGGTAGA TGCCATAAGG AGCGTTCTGG ATTTGAGGGC CCATGGACCT TCAACCCTCT GATTTTTGAC AACTCTTACT TCAAGGAGCT TCTAACAGGA GAGAAAGAAG GTTTGATTCA  GCTGCCTGCT GATAAGGCAC TGTTAGAGGA ACCCATTTTC TATTCCTATG TTGAGAAGTA TGCACAGGAT GAGGATGCCT TCTTCGCTGA TTATACAGAA TCTCACTTGA AGCTATCAGA  ACTTGGGTTT GCTGAGGAGG AGTAATTGCA GCATTTGAGG AGGAATGTTT TGATATATGC ATAGAAGGTT TTATTTGCTT AATGTTTGTC TAGCAAAGGG TGTTCTGATT TCTAGATATA  CATTGTTGTA CTACATAGAA AATCTTATGG GCTAGATGTT ATCAACTGCT CTACATACGT CCCTTCTCCT TTTGAATTAA GAATGCTGTT CGTCCTGAAA AAAAAAAAAA AAAAAAAAAC  GCGAGACGAA CAAAAATGGT GTGGTAAATT AAGCACGAGG AAGATGCAAA AGGTCCAACA CCAGACATGA ATTAATTAAA ATTAATTATT TCCAAATTGC CCATAGTGGT GCTGAGGATT 
CACT 

Retrieve as FASTA