Entry information : CbraAPx06 (g39625.t1)
Entry ID 12967
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2014-09-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-06-08 (Christophe Dunand)
Peroxidase information: CbraAPx06 (g39625.t1)
Name (synonym) CbraAPx06 (g39625.t1)
Class Ascorbate peroxidase    [Orthogroup: APx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraAPx06
start..stop
S start..stop
CvuAPx03 554 0 63..368 1..306
NhyAPx07 444 5e-157 46..376 37..371
McalAPx05 343 1e-117 81..371 30..316
CbrebAPx01 325 1e-111 112..369 1..259
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1879242..1879430 189 N° 2 1885679..1885777 99 N° 3 1889992..1890085 94 N° 4 1912708..1912742 35
N° 5 1917956..1918021 66 N° 6 1932104..1932144 41 N° 7 1934340..1934470 131 N° 8 1938748..1938854 107
N° 9 1941988..1942122 135 N° 10 1946482..1946616 135 N° 11 1953547..1953645 99  
join(1879242..1879430,1885679..1885777,1889992..1890085,1912708..1912742,1917956 ..1918021,1932104..1932144,1934340..1934470,1938748..1938854,1941988..1942122,19 46482..1946616,1953547..1953645)


exon

Literature and cross-references CbraAPx06 (g39625.t1)
Protein sequence: CbraAPx06 (g39625.t1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   376
PWM (Da):   %s   39595.33  
PI (pH):   %s   9.08
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAASATMAGV SLTRGGSMVD SCLPVGRARR ALRSQSTPAL PAGVPSHLFS GHVSTSKETG TTQVLARCEA AQGDTQDAST TGRRGTLVGL SALAAAASVW SPPLFVGVDA SASAADLTQR  IQRDEYRGGL QTKLVNLVDN NPDLVSDLMR LALNDALSFD KASKTGGANG SIRFSDELAR PENAGLEKAV AALGTLKEAF DAGKKGGPVA WADLIQFAGK AAVRQMFLNA AIAKAGGDVS  KGKQLNQAFG SSAQWGQFNK AFGRTDATEA DPANRVPAPD SSPAEWKEKF AAVGLKPRQV AVMSAFLGPD QEATEKKLME DPEIAPWVKK YQRSRETVSQ TDYEVDLITT LTKICVLGQS 
INYEAYTFKI PVKLRL 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_52, 8 introns).
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCGGCTT CAGCGACGAT GGCTGGCGTG TCCCTGACGC GTGGAGGCTC CATGGTCGAC TCCTGTCTTC CAGTTGGGCG AGCTCGTCGT GCCTTGCGTT CGCAGTCCAC GCCTGCATTG  CCAGCGGGAG TGCCGAGCCA TCTCTTCTCT GGACACGTGT CGACTTCGAA AGAAACGGGG ACCACCCAGG TTTTAGCGAG GTGTGAGGCT GCACAAGGTG ATACACAAGA TGCTTCTACA  ACAGGAAGAC GTGGAACCCT AGTGGGACTC TCGGCATTGG CAGCTGCTGC ATCGGTGTGG TCCCCCCCTC TATTTGTTGG AGTCGATGCA TCAGCAAGCG CTGCCGATTT GACTCAGAGA  ATCCAAAGAG ATGAGTACCG CGGTGGGTTG CAAACAAAGT TGGTCAATCT CGTAGACAAT AATCCAGACC TTGTTTCAGA TCTGATGAGG CTGGCCTTGA ATGACGCATT GTCGTTTGAC  AAGGCATCGA AAACTGGGGG AGCCAATGGC AGTATTCGCT TCAGCGACGA ACTTGCACGC CCTGAGAATG CAGGATTAGA GAAGGCCGTC GCAGCGCTCG GGACATTGAA AGAGGCATTT  GATGCTGGGA AGAAGGGAGG TCCTGTTGCC TGGGCTGACC TCATCCAGTT TGCTGGCAAG GCAGCTGTGA GGCAAATGTT CCTCAACGCA GCAATCGCCA AGGCTGGGGG AGATGTCAGC  AAAGGCAAGC AGCTTAACCA AGCCTTTGGA TCTTCGGCAC AGTGGGGTCA ATTCAATAAG GCATTTGGAC GGACAGATGC CACAGAAGCA GATCCGGCTA ACAGGGTGCC CGCTCCTGAT  TCTTCACCAG CAGAATGGAA GGAGAAGTTT GCTGCAGTTG GGCTTAAACC GAGACAGGTG GCAGTTATGT CCGCATTCCT GGGACCTGAC CAGGAGGCAA CGGAGAAGAA GTTAATGGAA  GATCCAGAAA TTGCCCCGTG GGTGAAGAAG TACCAGAGGA GCAGAGAAAC TGTGTCACAG ACAGACTATG AGGTGGATCT TATCACAACT TTGACAAAGA TTTGTGTTTT GGGTCAAAGT 
ATTAATTATG AGGCATACAC TTTCAAAATT CCAGTGAAAT TGAGGCTTTA A 

Retrieve as FASTA