Entry information : GbPrx17(Ginbil_Gb_40162 / Peroxidase17)
Entry ID 13080
Creation 2015-02-18 (Christophe Dunand)
Last sequence changes 2015-02-18 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-23 (Christophe Dunand)
Peroxidase information: GbPrx17(Ginbil_Gb_40162 / Peroxidase17)
Name GbPrx17(Ginbil_Gb_40162 / Peroxidase17)
Class Class III peroxidase    [Orthogroup: Prx019]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx17
start..stop
S start..stop
PsiPrx17 523 0 31..338 13..320
CmichPrx03 522 0 17..338 4..328
PgPrx17 514 0 16..338 6..332
WnoPrx01 463 3e-164 33..338 97..401
Literature and cross-references GbPrx17(Ginbil_Gb_40162 / Peroxidase17)
Protein sequence: GbPrx17(Ginbil_Gb_40162 / Peroxidase17)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   338
PWM (Da):   %s   37208.63 Transmb domain:   %s   i20-39o
PI (pH):   %s   6.5
Sequence
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Send to Peroxiscan
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MMTSQKQFLH RVRITSKMQW LPFLCTIFGL LVAGNGQLYE GFYHESCPQA EAVVKSVMKK AIERNPRNAA SVLRLQYHDC LVNGCDGSVL LDDTPTMAGE KNALSNINSL RAFEVIDEIK  EALEQVCPNT VSCADIIIIA ARDAVVLTGG PSWEVLLGRR DSLTASLDDS NDIMPSPRAN VTAMVKLFER FGLSVMDLVA LSGSHSIGEA RCFSVVFRLY NQSGSGKADP TIQWEYKEYL 
EKICPQGGDG NVTAGLDATP TVFDNRYFKD LVKGRGFLNS DEVLFSTHGE TRHLVELFSR DQSAFFANFT ASMITLGNLL SSHTSHCGEI RRNCRKVN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (PS is missing! RNA seq (gba_locus_1050_iso_1_len_1436_ver_2). No EST.
CDS
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ATGATGACTT CTCAGAAGCA ATTTTTGCAT CGAGTCAGAA TTACCTCGAA AATGCAGTGG CTGCCATTCC TGTGTACAAT TTTTGGCCTG CTGGTAGCTG GGAATGGCCA GTTATACGAA  GGCTTTTACC ATGAAAGTTG TCCTCAGGCA GAGGCTGTGG TGAAATCTGT GATGAAGAAA GCCATAGAAC GAAATCCCAG AAATGCTGCC TCGGTTCTGC GCCTTCAATA CCATGACTGT  TTAGTCAATG GCTGTGATGG TTCAGTGTTG TTGGATGACA CTCCTACCAT GGCTGGAGAG AAGAATGCTC TGTCCAACAT AAATTCATTG AGGGCATTTG AAGTAATTGA TGAGATCAAG  GAGGCTTTAG AACAAGTTTG CCCTAATACA GTCTCCTGTG CTGACATCAT CATCATTGCA GCAAGGGATG CTGTGGTTCT GACTGGGGGT CCTTCCTGGG AAGTGCTGTT GGGGAGAAGA  GACAGTCTAA CGGCTAGTCT GGATGATTCC AATGACATAA TGCCGAGTCC TCGGGCGAAT GTTACAGCCA TGGTCAAACT CTTCGAACGT TTCGGCCTCT CTGTTATGGA TTTGGTGGCT  CTTTCAGGCA GTCATAGTAT TGGAGAAGCG CGTTGTTTTT CGGTTGTTTT CAGGCTTTAC AACCAGAGCG GTTCAGGGAA GGCTGACCCA ACGATCCAGT GGGAGTATAA AGAGTATTTG  GAGAAGATTT GTCCTCAGGG TGGAGATGGA AATGTGACTG CAGGTCTGGA TGCAACTCCC ACTGTTTTTG ACAACCGATA CTTCAAAGAC CTGGTTAAGG GAAGAGGGTT CTTGAATTCG  GATGAGGTTC TCTTCTCCAC ACATGGAGAA ACCAGACACT TGGTGGAGCT TTTTAGCAGA GATCAATCTG CCTTCTTTGC CAACTTCACT GCTTCCATGA TTACCCTTGG GAATCTCTTA 
TCCTCGCACA CATCACACTG TGGAGAGATC AGGAGAAATT GCCGAAAGGT TAATTAA 

Retrieve as FASTA  
cDNA
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TTCTTCCCAG TGCCTATCAG AGTCCGAGTT TGAACCTAGT TTGTATGCCC CGTTTGCCCA CCACCTCTGT CAGATTTTTT TTATTTATTT ATTTTTATTT AAATTACGTC TTGAATTTGG  ACACGACTCT GCACTATATC TGATTCCCAT TGCAGGTTAG ATTCAGCTTT ACTGTGCATG TTTTGCTTAT ATGGGGATGC TGGTCATTAT GTTGTTATAA TTTCTTGCAA GGACAGCGGT  TTGTTTTATC ACATGCATAT TCTATAGAGG TTAGCCAGTG AAAACCAGAT GATGACTTCT CAGAAGCAAT TTTTGCATCG AGTCAGAATT ACCTCGAAAA TGCAGTGGCT GCCATTCCTG  TGTACAATTT TTGGCCTGCT GGTAGCTGGG AATGGCCAGT TATACGAAGG CTTTTACCAT GAAAGTTGTC CTCAGGCAGA GGCTGTGGTG AAATCTGTGA TGAAGAAAGC CATAGAACGA  AATCCCAGAA ATGCTGCCTC GGTTCTGCGC CTTCAATACC ATGACTGTTT AGTCAATGGC TGTGATGGTT CAGTGTTGTT GGATGACACT CCTACCATGG CTGGAGAGAA GAATGCTCTG  TCCAACATAA ATTCATTGAG GGCATTTGAA GTAATTGATG AGATCAAGGA GGCTTTAGAA CAAGTTTGCC CTAATACAGT CTCCTGTGCT GACATCATCA TCATTGCAGC AAGGGATGCT  GTGGTTCTGA CTGGGGGTCC TTCCTGGGAA GTGCTGTTGG GGAGAAGAGA CAGTCTAACG GCTAGTCTGG ATGATTCCAA TGACATAATG CCGAGTCCTC GGGCGAATGT TACAGCCATG  GTCAAACTCT TCGAACGTTT CGGCCTCTCT GTTATGGATT TGGTGGCTCT TTCAGGCAGT CATAGTATTG GAGAAGCGCG TTGTTTTTCG GTTGTTTTCA GGCTTTACAA CCAGAGCGGT  TCAGGGAAGG CTGACCCAAC GATCCAGTGG GAGTATAAAG AGTATTTGGA GAAGATTTGT CCTCAGGGTG GAGATGGAAA TGTGACTGCA GGTCTGGATG CAACTCCCAC TGTTTTTGAC  AACCGATACT TCAAAGACCT GGTTAAGGGA AGAGGGTTCT TGAATTCGGA TGAGGTTCTC TTCTCCACAC ATGGAGAAAC CAGACACTTG GTGGAGCTTT TTAGCAGAGA TCAATCTGCC  TTCTTTGCCA ACTTCACTGC TTCCATGATT ACCCTTGGGA ATCTCTTATC CTCGCACACA TCACACTGTG GAGAGATCAG GAGAAATTGC CGAAAGGTTA ATTAAAATAT ATTGTAAACT 
CATCTTTGTG GGATAGCAAA TATATATTTA CTGTTACGTT TTTTTTTTGC CCCAAGGCAC TGGACTGTAA TTGTCAGTAT GGCAGGTCGC TGTAGCTTCT ATTTAATGCT TTCCAG 

Retrieve as FASTA