Entry information : GbAPx04 (gba_locus_1180_iso_6_len_1643_ver_2)
Entry ID 13081
Creation 2015-02-18 (Christophe Dunand)
Last sequence changes 2015-02-18 (Christophe Dunand)
Sequence status partial
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbAPx04 (gba_locus_1180_iso_6_len_1643_ver_2)
Name (synonym) GbAPx04 (gba_locus_1180_iso_6_len_1643_ver_2)
Class Ascorbate peroxidase     [Orthogroup: APx002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation Chloroplastic
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbAPx04
start..stop
S start..stop
PtaAPx04 642 0 34..407 16..392
WnoAPx01 599 0 37..408 36..407
StAPx06 595 0 45..408 65..423
VvAPx06 595 0 58..408 77..424
Literature and cross-references GbAPx04 (gba_locus_1180_iso_6_len_1643_ver_2)
Protein sequence: GbAPx04 (gba_locus_1180_iso_6_len_1643_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   408
PWM (Da):   %s   44727.81 Transmb domain:   %s   o384-406i
PI (pH):   %s   7.88
Sequence
Send to BLAST
Send to Peroxiscan
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NRSSDLFASL PNLTPSTCRG KANVRPFSIR IKPQGFSTFL PQYTSTSSTR VRRAVFLSPT CFASDPEQLK KAREDIRELI KTTHCNPILI RLGWHDAGTY DKNIQEWPKC GGANGSLRFE  IELKHNANAG LSNALKLLQP VKDKNPNITY ADLFQLASAT AIEVAGGPDI PMKYGRVDAS GPEDCPPEGK LPDAGPPSPA GHLRDIFYRM GLTDKEIVAL SGAHTLGRSR PERSGWGKPG  TKYTKDGPGA PGGQSWTVEW LKFDNSYFKE IKERRDEDLL VLPTDAVLFE DPGFKEYAEK YAVDQNAFFE DYAEAHAKLS NLGAKFDPPD GFSIADSPKE QAPEKFVAAK YSSGESEKSE 
LSEAMKKKIR AEYLAFGGSP NKPLQSNYFL NIIIFVAVLA ILAALFGN 

Retrieve as FASTA  
Remarks Partial sequence from from RNA seq. No EST. Short 5' end is missing.
CDS
Send to BLAST
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AACCGCTCTT CCGATCTATT TGCTTCCCTC CCCAACCTCA CGCCCTCGAC CTGCAGAGGC AAAGCCAATG TGCGTCCCTT TTCCATCCGG ATAAAGCCCC AAGGCTTTTC TACATTTCTG  CCGCAATATA CATCAACTAG CAGTACTAGG GTAAGGAGGG CAGTATTCCT CTCTCCGACC TGCTTTGCAT CTGATCCTGA GCAGCTGAAA AAGGCCAGAG AAGACATAAG GGAGCTCATT  AAAACAACTC ACTGTAATCC AATTCTGATT CGATTGGGAT GGCATGATGC TGGCACATAT GACAAGAACA TTCAAGAGTG GCCTAAATGT GGCGGTGCCA ATGGAAGCTT GCGCTTTGAG  ATAGAATTAA AGCACAATGC AAATGCCGGT CTTTCAAATG CATTAAAGTT GTTGCAACCT GTGAAAGACA AAAATCCGAA TATTACCTAT GCAGATCTGT TCCAATTAGC CAGTGCTACG  GCGATTGAGG TGGCTGGAGG CCCTGACATT CCTATGAAAT ATGGACGTGT GGATGCATCT GGGCCAGAAG ATTGTCCACC AGAAGGAAAA CTTCCAGATG CCGGTCCTCC TTCACCAGCT  GGCCATCTGC GTGATATCTT CTACAGAATG GGATTGACAG ACAAGGAAAT TGTTGCATTA TCGGGTGCAC ACACTCTTGG AAGGTCTCGG CCAGAGCGTA GTGGTTGGGG CAAGCCTGGG  ACCAAGTACA CGAAAGATGG CCCGGGAGCA CCAGGAGGTC AATCATGGAC AGTGGAATGG CTAAAGTTTG ATAATTCTTA CTTCAAGGAG ATAAAAGAGA GGAGGGATGA AGATTTACTG  GTATTGCCAA CTGATGCTGT TCTTTTTGAA GATCCTGGTT TCAAGGAATA TGCTGAGAAA TATGCAGTTG ATCAGAATGC CTTTTTCGAG GATTATGCAG AGGCTCATGC AAAACTCAGT  AACCTTGGTG CAAAGTTTGA TCCTCCTGAT GGGTTTTCTA TTGCTGATTC TCCTAAGGAA CAAGCGCCAG AGAAGTTTGT AGCCGCAAAA TATTCTTCTG GGGAAAGTGA GAAGAGCGAA  CTATCTGAGG CAATGAAGAA AAAAATTCGT GCTGAATACC TAGCTTTTGG GGGGAGCCCA AATAAGCCCC TTCAGTCAAA TTACTTTCTC AACATCATCA TTTTTGTAGC TGTGTTAGCA 
ATTTTGGCAG CACTGTTTGG AAATTGA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AACCGCTCTT CCGATCTATT TGCTTCCCTC CCCAACCTCA CGCCCTCGAC CTGCAGAGGC AAAGCCAATG TGCGTCCCTT TTCCATCCGG ATAAAGCCCC AAGGCTTTTC TACATTTCTG  CCGCAATATA CATCAACTAG CAGTACTAGG GTAAGGAGGG CAGTATTCCT CTCTCCGACC TGCTTTGCAT CTGATCCTGA GCAGCTGAAA AAGGCCAGAG AAGACATAAG GGAGCTCATT  AAAACAACTC ACTGTAATCC AATTCTGATT CGATTGGGAT GGCATGATGC TGGCACATAT GACAAGAACA TTCAAGAGTG GCCTAAATGT GGCGGTGCCA ATGGAAGCTT GCGCTTTGAG  ATAGAATTAA AGCACAATGC AAATGCCGGT CTTTCAAATG CATTAAAGTT GTTGCAACCT GTGAAAGACA AAAATCCGAA TATTACCTAT GCAGATCTGT TCCAATTAGC CAGTGCTACG  GCGATTGAGG TGGCTGGAGG CCCTGACATT CCTATGAAAT ATGGACGTGT GGATGCATCT GGGCCAGAAG ATTGTCCACC AGAAGGAAAA CTTCCAGATG CCGGTCCTCC TTCACCAGCT  GGCCATCTGC GTGATATCTT CTACAGAATG GGATTGACAG ACAAGGAAAT TGTTGCATTA TCGGGTGCAC ACACTCTTGG AAGGTCTCGG CCAGAGCGTA GTGGTTGGGG CAAGCCTGGG  ACCAAGTACA CGAAAGATGG CCCGGGAGCA CCAGGAGGTC AATCATGGAC AGTGGAATGG CTAAAGTTTG ATAATTCTTA CTTCAAGGAG ATAAAAGAGA GGAGGGATGA AGATTTACTG  GTATTGCCAA CTGATGCTGT TCTTTTTGAA GATCCTGGTT TCAAGGAATA TGCTGAGAAA TATGCAGTTG ATCAGAATGC CTTTTTCGAG GATTATGCAG AGGCTCATGC AAAACTCAGT  AACCTTGGTG CAAAGTTTGA TCCTCCTGAT GGGTTTTCTA TTGCTGATTC TCCTAAGGAA CAAGCGCCAG AGAAGTTTGT AGCCGCAAAA TATTCTTCTG GGGAAAGTGA GAAGAGCGAA  CTATCTGAGG CAATGAAGAA AAAAATTCGT GCTGAATACC TAGCTTTTGG GGGGAGCCCA AATAAGCCCC TTCAGTCAAA TTACTTTCTC AACATCATCA TTTTTGTAGC TGTGTTAGCA  ATTTTGGCAG CACTGTTTGG AAATTGATCT TTATATATTT TTAGGGAACT CTGAGGAACA TAGATGTCTC TGACACTTTC ATCCCAACAA AATTGAGTAG TCTCAAGCCC CAAATTTGCA  ATAACAAAAA CTATTCATCT GGTAAATGAT CAAATACTGT AGAATTTTGG CTTGAGAAAT TAGAGTTTAA AAGTCAGTTT ATGTTTTTGT TTTGGGAACC AGTTGGGGAA GGTCCCACTG  GTTACAGACT ACAGTTGGTT ACAACTTAGG TGGTTATCAT CCTAAAAGGA TTTGGAAACT ACATTGTTTA TTGCCAGTTT GGTTTAAGAG TGTTTAGGCA TGATATTTGT AGTATTTGTT 
AGTATTGTGG TCTGGATTTA TACTTTTCCA CTTCGTAACA TTTGCACATG GAAGAAAAAA AGAGCTTTTT AGTTGGTTGT GGC 

Retrieve as FASTA