Entry information : GbPrx14(Ginbil_Gb_31013/Ginbil_Gb_31015)
Entry ID 13084
Creation 2015-02-18 (Christophe Dunand)
Last sequence changes 2015-02-18 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-24 (Christophe Dunand)
Peroxidase information: GbPrx14(Ginbil_Gb_31013/Ginbil_Gb_31015)
Name GbPrx14(Ginbil_Gb_31013/Ginbil_Gb_31015)
Class Class III peroxidase    [Orthogroup: Prx005]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx14
start..stop
S start..stop
PabPrx50 413 3e-145 18..346 1..329
PtaPrx14 404 3e-142 18..345 1..326
PabPrx98 402 3e-141 18..345 1..328
GbPrx52 397 2e-139 18..345 1..327
Literature and cross-references GbPrx14(Ginbil_Gb_31013/Ginbil_Gb_31015)
Protein sequence: GbPrx14(Ginbil_Gb_31013/Ginbil_Gb_31015)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   346
PWM (Da):   %s   37559.03 Transmb domain:   %s   i20-42o
PI (pH):   %s   9.52
Sequence
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Send to Peroxiscan
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MSKRRVAKGI GLIWPSSMEF RALPLCKITI ICTFLMAGIA HAQLCTGFYD KTCPNLESIV FSVVQNAVCK EQRMAASLLR LHFHDCFVNG CDGSILLDKT TSMTGEKTAP PNKKSLRGFD  VIDSIKTAVE AACSGVVSCA DILTIAARDS VVLAGFPSWN VMLGRRDSRT ANFNDVVPSL PGSDDGLSKI RSKFRKVGLD TTDLVALSGG HTIGRAHCTS FNNRLFNYNG TGSPDPTIDK 
SYLTTLQKRC PQGGNNRTLS PLDRDTPNTF DNKYFANLQG KKGLLRSDQE LYSKSGATIK SLVDSFSSCQ STFFSNFKAS MIKMGNIRPL TGSSGEIRLD CRKINS 

Retrieve as FASTA  
Remarks Complete sequence from genomic (incorrect prediction from SymDB: Ginbil_Gb_31013 (exon is missing) and Ginbil_Gb_31015 (exons 2, 3 and 4, exon 3 partial)) and RNA seq (ggba_locus_3408_iso_2_len_1203_ver_2, incorrect prediction). No EST.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGCAAAA GAAGAGTAGC CAAGGGAATT GGTTTGATTT GGCCTTCATC CATGGAATTC AGAGCACTAC CATTGTGCAA AATAACAATA ATTTGCACAT TTTTAATGGC AGGAATAGCG  CATGCTCAAC TGTGTACTGG CTTTTACGAT AAGACTTGCC CAAACCTAGA GAGTATTGTA TTTAGTGTCG TTCAAAATGC AGTGTGCAAG GAACAACGCA TGGCTGCATC TCTGCTTCGT  CTTCATTTTC ACGACTGCTT TGTTAATGGT TGCGATGGAT CAATACTTCT AGATAAGACA ACTTCAATGA CAGGAGAAAA AACTGCTCCA CCCAATAAGA AGTCTCTCAG AGGATTTGAT  GTTATTGACA GCATCAAGAC TGCTGTGGAG GCGGCGTGCA GTGGCGTAGT CTCCTGCGCT GATATCCTGA CTATTGCTGC GAGAGACTCC GTGGTTTTGG CGGGTTTTCC TTCATGGAAT  GTGATGTTGG GTAGGAGAGA TAGCAGGACA GCAAATTTTA ACGATGTAGT GCCTTCTCTT CCTGGTTCAG ACGACGGACT ATCCAAAATT AGATCCAAAT TTCGAAAAGT TGGCCTAGAT  ACAACGGATT TGGTAGCTCT ATCAGGTGGG CATACTATCG GACGAGCTCA CTGCACATCG TTTAACAATA GGCTCTTCAA TTATAATGGC ACTGGAAGCC CTGATCCTAC GATTGATAAA  TCATACCTTA CAACCCTGCA GAAGAGATGT CCTCAAGGTG GAAATAACCG AACCTTATCG CCTCTGGATC GTGATACGCC AAACACTTTT GATAACAAGT ACTTTGCAAA TCTTCAGGGT  AAAAAGGGTC TGCTTCGGTC AGATCAAGAG CTCTATTCAA AATCAGGTGC AACCATAAAA TCTCTTGTTG ACAGTTTTAG TAGCTGTCAA AGCACCTTTT TCTCCAATTT TAAGGCGTCC 
ATGATTAAAA TGGGAAACAT ACGCCCTCTG ACTGGAAGCA GTGGAGAAAT CCGACTGGAC TGCAGAAAAA TCAATAGTTG A 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TAGCTGTAAA TTCAATGAGC AAAAGAAGAG TAGCCAAGGG AATTGGTTTG ATTTGGCCTT CATCCATGGA ATTCAGAGCA CTACCATTGT GCAAAATAAC AATAATTTGC ACATTTTTAA  TGGCAGGAAT AGCGCATGCT CAACTGTGTA CTGGCTTTTA CGATAAGACT TGCCCAAACC TAGAGAGTAT TGTATTTAGT GTCGTTCAAA ATGCAGTGTG CAAGGAACAA CGCATGGCTG  CATCTCTGCT TCGTCTTCAT TTTCACGACT GCTTTGTTAA TGGTTGCGAT GGATCAATAC TTCTAGATAA GACAACTTCA ATGACAGGAG AAAAAACTGC TCCACCCAAT AAGAAGTCTC  TCAGAGGATT TGATGTTATT GACAGCATCA AGACTGCTGT GGAGGCGGCG TGCAGTGGCG TAGTCTCCTG CGCTGATATC CTGACTATTG CTGCGAGAGA CTCCGTGGTT TTGGCGGGTT  TTCCTTCATG GAATGTGATG TTGGGTAGGA GAGATAGCAG GACAGCAAAT TTTAACGATG TAGTGCCTTC TCTTCCTGGT TCAGACGACG GACTATCCAA AATTAGATCC AAATTTCGAA  AAGTTGGCCT AGATACAACG GATTTGGTAG CTCTATCAGG TGGGCATACT ATCGGACGAG CTCACTGCAC ATCGTTTAAC AATAGGCTCT TCAATTATAA TGGCACTGGA AGCCCTGATC  CTACGATTGA TAAATCATAC CTTACAACCC TGCAGAAGAG ATGTCCTCAA GGTGGAAATA ACCGAACCTT ATCGCCTCTG GATCGTGATA CGCCAAACAC TTTTGATAAC AAGTACTTTG  CAAATCTTCA GGGTAAAAAG GGTCTGCTTC GGTCAGATCA AGAGCTCTAT TCAAAATCAG GTGCAACCAT AAAATCTCTT GTTGACAGTT TTAGTAGCTG TCAAAGCACC TTTTTCTCCA  ATTTTAAGGC GTCCATGATT AAAATGGGAA ACATACGCCC TCTGACTGGA AGCAGTGGAG AAATCCGACT GGACTGCAGA AAAATCAATA GTTGAGCTCT CCAAGCTCAA GATCAGTTTC  ATTATGGTTC AATCACTAAG GATGTGTTGT ATTGTTTAAA GAAGGTTGTT CAGTATGTAA TACAATGATT ATGTCTCATG TATGGTTTTC CTCACACTAC TCTTAATATT GTAATCGTGT 
TT 

Retrieve as FASTA