Entry information : GbPrx26(Ginbil_Gb_40170)
Entry ID 13098
Creation 2015-02-26 (Christophe Dunand)
Last sequence changes 2015-02-26 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-24 (Christophe Dunand)
Peroxidase information: GbPrx26(Ginbil_Gb_40170)
Name GbPrx26(Ginbil_Gb_40170)
Class Class III peroxidase    [Orthogroup: Prx016]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx26
start..stop
S start..stop
PtaPrx29 445 1e-158 25..327 18..320
WnoPrx03 444 4e-158 28..327 23..322
GbPrx16 433 6e-154 3..327 1..323
AtrPrx53 404 2e-142 16..328 12..322
Literature and cross-references GbPrx26(Ginbil_Gb_40170)
Protein sequence: GbPrx26(Ginbil_Gb_40170)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   328 (303)
PWM (Da):   %s   34642.14 (32162.0)  
PI (pH):   %s   4.46 (4.36) Peptide Signal:   %s   cut: 26 range:26-328
Sequence
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Send to Peroxiscan
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MPMGKGGLTA VRMAVLISSI CCCSAQGGLR VGFYSDSCAD AESIVRSRVE ARIQSDPTIA AALLRLHYHD CFVQGCDGSI LIAGPNAERS APTHAGLRGF DVIEDAKTQV ELTCPEVVSC  ADIIALAARD ALLLSKGPNY DVPTGRRDGV ESSAADASDM PDPTDSVDLL LNKFAAKGLS ASDLVVLNGA HTIGTTACFF VQQRLYNFTT DGSSDPTINP ELLTELKQTC PAHGNVNARL 
ALDIGSQFDF DTNFLSNVRE GNAVLESDAK LYEDTSTRAY IDSYFGLLSG ILGPYFASDF VDAIVRLGQI DVKSGSGGEI RRVCSAFN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (incorrect prediction from SymDB, splicing error intron 3) and RNA seq (gba_locus_20428_iso_1_len_1143_ver_2). No EST found.
CDS
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ATGCCAATGG GGAAAGGCGG ATTAACGGCA GTGAGAATGG CAGTTTTGAT CTCTAGCATT TGTTGCTGCT CAGCCCAAGG CGGTTTGAGA GTGGGGTTTT ACTCCGATAG CTGTGCGGAT  GCAGAGTCTA TTGTGAGATC GAGGGTGGAG GCTCGAATCC AATCCGATCC AACAATTGCA GCAGCTCTGT TGCGTCTCCA CTATCACGAC TGCTTCGTTC AGGGCTGCGA CGGTTCGATA  CTCATTGCCG GACCCAATGC CGAGCGATCT GCACCAACTC ATGCGGGATT GCGTGGCTTT GACGTTATCG AAGATGCTAA AACACAAGTT GAATTAACTT GTCCGGAAGT GGTTTCATGT  GCAGATATAA TCGCACTTGC AGCACGAGAT GCTCTATTAT TGAGCAAGGG ACCCAACTAC GATGTACCCA CGGGGCGAAG GGACGGAGTG GAATCATCTG CTGCAGACGC TTCTGACATG  CCCGACCCCA CAGATTCAGT CGATCTCCTT CTGAACAAGT TCGCTGCAAA AGGACTTTCT GCATCTGATC TTGTTGTTCT CAATGGGGCT CATACAATCG GGACAACGGC CTGTTTCTTC  GTCCAGCAAC GCCTCTACAA TTTTACCACC GACGGAAGTT CCGATCCCAC CATTAATCCA GAGTTGTTAA CAGAGCTCAA ACAAACTTGT CCGGCTCATG GTAATGTTAA TGCGAGATTG  GCGCTCGACA TAGGAAGCCA ATTCGATTTC GACACCAATT TTCTGAGCAA TGTGAGAGAG GGAAACGCAG TACTGGAATC GGATGCCAAG TTGTATGAAG ACACCTCCAC TCGAGCGTAC  ATCGACTCAT ATTTTGGCCT TCTCAGTGGA ATTTTAGGTC CGTACTTCGC ATCGGATTTT GTAGATGCAA TTGTTCGGTT GGGTCAGATT GATGTCAAAA GTGGATCGGG TGGAGAGATA 
CGGCGTGTTT GCTCAGCTTT CAACTAG 

Retrieve as FASTA  
cDNA
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AGATAATGCC AATGGGGAAA GGCGGATTAA CGGCAGTGAG AATGGCAGTT TTGATCTCTA GCATTTGTTG CTGCTCAGCC CAAGGCGGTT TGAGAGTGGG GTTTTACTCC GATAGCTGTG  CGGATGCAGA GTCTATTGTG AGATCGAGGG TGGAGGCTCG AATCCAATCC GATCCAACAA TTGCAGCAGC TCTGTTGCGT CTCCACTATC ACGACTGCTT CGTTCAGGGC TGCGACGGTT  CGATACTCAT TGCCGGACCC AATGCCGAGC GATCTGCACC AACTCATGCG GGATTGCGTG GCTTTGACGT TATCGAAGAT GCTAAAACAC AAGTTGAATT AACTTGTCCG GAAGTGGTTT  CATGTGCAGA TATAATCGCA CTTGCAGCAC GAGATGCTCT ATTATTGAGC AAGGGACCCA ACTACGATGT ACCCACGGGG CGAAGGGACG GAGTGGAATC ATCTGCTGCA GACGCTTCTG  ACATGCCCGA CCCCACAGAT TCAGTCGATC TCCTTCTGAA CAAGTTCGCT GCAAAAGGAC TTTCTGCATC TGATCTTGTT GTTCTCAATG GGGCTCATAC AATCGGGACA ACGGCCTGTT  TCTTCGTCCA GCAACGCCTC TACAATTTTA CCACCGACGG AAGTTCCGAT CCCACCATTA ATCCAGAGTT GTTAACAGAG CTCAAACAAA CTTGTCCGGC TCATGGTAAT GTTAATGCGA  GATTGGCGCT CGACATAGGA AGCCAATTCG ATTTCGACAC CAATTTTCTG AGCAATGTGA GAGAGGGAAA CGCAGTACTG GAATCGGATG CCAAGTTGTA TGAAGACACC TCCACTCGAG  CGTACATCGA CTCATATTTT GGCCTTCTCA GTGGAATTTT AGGTCCGTAC TTCGCATCGG ATTTTGTAGA TGCAATTGTT CGGTTGGGTC AGATTGATGT CAAAAGTGGA TCGGGTGGAG  AGATACGGCG TGTTTGCTCA GCTTTCAACT AGCTGCCAAA TAAAACAGAT CACGAACAGG ATGATCATAT AAAGCATTTT TGGGATCACG ATGCTTGTGA TGTGGATGTA TGCATTATCC 
AAATGGAAAC CGAAAGAATT TGTATTTGTC CATATAATTA ATCAAACAAG GTTTCGCTAA AAA 

Retrieve as FASTA