Entry information : GbPrx27 (gba_locus_22424_iso_3_len_1338_ver_2)
Entry ID 13099
Creation 2015-02-26 (Christophe Dunand)
Last sequence changes 2015-02-26 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbPrx27 (gba_locus_22424_iso_3_len_1338_ver_2)
Name (synonym) GbPrx27 (gba_locus_22424_iso_3_len_1338_ver_2)
Class Class III peroxidase    [Orthogroup: Prx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue types Leaves
Leaves (fully expanded)
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx27
start..stop
S start..stop
GbPrx43 523 0 9..335 1..323
PtaPrx57 504 0 4..335 2..337
AcoPrx83 487 2e-175 32..335 19..323
VvPrx47 479 3e-172 30..335 18..324
Literature and cross-references GbPrx27 (gba_locus_22424_iso_3_len_1338_ver_2)
EST ref. GenBank:   GE649842.1 [5' end]
Protein sequence: GbPrx27 (gba_locus_22424_iso_3_len_1338_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   335 (302)
PWM (Da):   %s   35352.87 (31686.9) Transmb domain:   %s   i12-31o
PI (pH):   %s   7.92 (7.68) Peptide Signal:   %s   cut: 34 range:34-335
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MLFRMQQSMQ PTIALMAFKA IVAFLCIIVL AEGQGTKVGF YSSTCPRAES IVKSTVQSHF TADQTIAAGI LRLFFHDCFV QGCDASILIT GPSAEKNSLT NLGLRGFEVI EDAKTQLEAA  CPGIVSCADI LALAARDAVV VSKGLSWSVP TGRRDGLVSS SSDAANLPTP ADSVSVQKQK FADKGLNAED LVTLVGAHTI GQTDCQFFSY RLYNFTAAGN ADPTVSSGYL SQLQSLCPAG 
GDGSKRVALD KGSQTAFDAS FFKNVRDGNA VLESDQRLWG DDSTKSVVQK YAGSIRGVVG VRFDVAFGKA MVKMSNIGVK SGTQGEIRKV CSSFN 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and 1 EST.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTTGTTTA GAATGAGAAT GCAGCAAAGC ATGCAGCCTA CAATTGCCCT CATGGCTTTT AAGGCTATTG TTGCATTTCT GTGCATTATT GTGTTAGCCG AAGGTCAGGG AACGAAGGTC  GGGTTTTATT CGTCCACTTG TCCGAGAGCT GAGTCTATTG TTAAATCGAC CGTTCAATCC CATTTCACAG CCGACCAAAC TATTGCAGCT GGGATTCTTA GGCTTTTCTT TCACGATTGC  TTCGTCCAGG GGTGCGATGC GTCCATACTC ATCACTGGTC CATCTGCAGA GAAAAACTCG CTTACAAATC TTGGATTGAG AGGATTTGAA GTTATTGAAG ACGCCAAGAC ACAGCTAGAA  GCTGCATGCC CAGGAATCGT TTCATGTGCT GACATTCTCG CTCTTGCAGC CCGCGATGCT GTAGTTGTGA GTAAGGGATT GAGCTGGTCT GTGCCAACGG GAAGGAGAGA TGGGTTGGTT  TCATCTTCCT CGGATGCAGC AAATCTGCCA ACTCCAGCAG ACTCCGTCAG CGTACAGAAG CAGAAGTTTG CTGATAAAGG CCTCAACGCC GAAGATCTTG TAACACTTGT TGGAGCACAT  ACGATTGGAC AAACGGATTG CCAGTTCTTC AGCTACCGCC TCTACAACTT CACAGCGGCG GGGAATGCGG ATCCGACAGT AAGTTCAGGA TATCTGAGTC AACTGCAATC TCTGTGTCCT  GCGGGAGGCG ATGGTTCGAA GCGCGTGGCT CTGGACAAGG GCAGCCAAAC GGCATTTGAC GCGAGTTTCT TCAAGAACGT GAGGGACGGA AACGCGGTGC TTGAATCGGA CCAGAGGCTG  TGGGGAGACG ACTCCACCAA AAGTGTTGTT CAAAAGTACG CGGGAAGCAT CAGAGGAGTG GTGGGTGTCC GATTTGACGT GGCATTCGGA AAGGCTATGG TGAAAATGAG CAACATCGGA 
GTCAAGAGCG GAACACAGGG TGAAATTCGC AAAGTCTGCT CTTCGTTCAA TTAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTGCATAGCC AAACATATGG CCCTGACACA TTGCATCACT TCTCATTGCG CATTATAAGT TGAGGGAGAT CTTGCGTTCT TTTGAAGTAA TTGCATGTTG TTTAGAATGA GAATGCAGCA  AAGCATGCAG CCTACAATTG CCCTCATGGC TTTTAAGGCT ATTGTTGCAT TTCTGTGCAT TATTGTGTTA GCCGAAGGTC AGGGAACGAA GGTCGGGTTT TATTCGTCCA CTTGTCCGAG  AGCTGAGTCT ATTGTTAAAT CGACCGTTCA ATCCCATTTC ACAGCCGACC AAACTATTGC AGCTGGGATT CTTAGGCTTT TCTTTCACGA TTGCTTCGTC CAGGGGTGCG ATGCGTCCAT  ACTCATCACT GGTCCATCTG CAGAGAAAAA CTCGCTTACA AATCTTGGAT TGAGAGGATT TGAAGTTATT GAAGACGCCA AGACACAGCT AGAAGCTGCA TGCCCAGGAA TCGTTTCATG  TGCTGACATT CTCGCTCTTG CAGCCCGCGA TGCTGTAGTT GTGAGTAAGG GATTGAGCTG GTCTGTGCCA ACGGGAAGGA GAGATGGGTT GGTTTCATCT TCCTCGGATG CAGCAAATCT  GCCAACTCCA GCAGACTCCG TCAGCGTACA GAAGCAGAAG TTTGCTGATA AAGGCCTCAA CGCCGAAGAT CTTGTAACAC TTGTTGGAGC ACATACGATT GGACAAACGG ATTGCCAGTT  CTTCAGCTAC CGCCTCTACA ACTTCACAGC GGCGGGGAAT GCGGATCCGA CAGTAAGTTC AGGATATCTG AGTCAACTGC AATCTCTGTG TCCTGCGGGA GGCGATGGTT CGAAGCGCGT  GGCTCTGGAC AAGGGCAGCC AAACGGCATT TGACGCGAGT TTCTTCAAGA ACGTGAGGGA CGGAAACGCG GTGCTTGAAT CGGACCAGAG GCTGTGGGGA GACGACTCCA CCAAAAGTGT  TGTTCAAAAG TACGCGGGAA GCATCAGAGG AGTGGTGGGT GTCCGATTTG ACGTGGCATT CGGAAAGGCT ATGGTGAAAA TGAGCAACAT CGGAGTCAAG AGCGGAACAC AGGGTGAAAT  TCGCAAAGTC TGCTCTTCGT TCAATTAATT TGAATGCCAA TACATTCAAA CAATCATAAT AGCGATCATG AAGAATTATG CACGTAAATG TTAAAAAAAA AATTATGATT TTATTTTGCT  CCTCGCATGT AATAAAGGAA AACAAAAATG TTTCACCATA CTCGGGTCAT ATTTCTTGAT ACAAAACACA AATTTATGCA AATTATCCAT GTTTGCGGAA TATGAATAAA ATGCAAACGC 
TTGTCGGCTG AAAAAAAA 

Retrieve as FASTA