Entry information : GbPrx34(Ginbil_Gb_01887)
Entry ID 13125
Creation 2015-04-13 (Christophe Dunand)
Last sequence changes 2015-04-13 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-23 (Christophe Dunand)
Peroxidase information: GbPrx34(Ginbil_Gb_01887)
Name GbPrx34(Ginbil_Gb_01887)
Class Class III peroxidase    [Orthogroup: Prx036]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx34
start..stop
S start..stop
PabPrx67 505 0 34..331 30..327
PgPrx29 498 4e-179 34..333 41..343
PabPrx195 466 2e-166 24..333 31..343
PabPrx[P]66 447 2e-159 34..331 25..317
Literature and cross-references GbPrx34(Ginbil_Gb_01887)
Protein sequence: GbPrx34(Ginbil_Gb_01887)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   333 (307)
PWM (Da):   %s   36401.66 (33462.0)  
PI (pH):   %s   10.19 (10.24) Peptide Signal:   %s   cut: 27 range:27-333
Sequence
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Send to Peroxiscan
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MALRLTGLLV QFLLYCTLIN VHRAEAAAAP KLRLTKDHYK QSCPKVESVV RETIRNATKF DPKVSARILR MHFHDCFIRG CDASVLLDST PGKQAEKDAP PNVSLRSFYV IDDAKTKLES  ICPRTVSCAD ILAIAARDVV VQSGGPHWEV PKGRKDGMIS KANDTRNLPA PTFNVSQLIQ SFALRGLSIS DLVALSGGHT LGFSHCSSFA SRLHNFNASH RVDPSIQQQF AQSLRSVCPQ 
TNTNRSAGAF LDSTANQFDN TYFQHLLQGK GVFGSDQSLF LDDRTKSLVN TFASNQKAFF TAFAKSMVKM GSVGVNKSGG QIRINCRKIN NSS 

Retrieve as FASTA  
Remarks Complete sequence from genomic (uncorrect prediction from SymDB; PS is missing) and RNA seq (gba_locus_15301_iso_1_len_1227_ver_2)
CDS
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ATGGCTCTGC GATTGACCGG ACTGTTAGTG CAATTTCTCC TCTACTGTAC TCTTATTAAT GTACACAGGG CTGAGGCTGC CGCTGCCCCC AAACTCCGGC TCACAAAAGA TCACTACAAG  CAGAGCTGCC CGAAAGTAGA GAGTGTGGTG AGAGAGACGA TACGCAACGC AACCAAGTTC GATCCCAAGG TCTCTGCTCG TATTCTCAGG ATGCACTTCC ACGACTGCTT CATCCGGGGG  TGTGACGCCT CAGTGCTGTT GGACTCCACT CCCGGAAAGC AGGCGGAGAA GGACGCCCCT CCCAACGTAT CGCTGCGCTC CTTCTATGTC ATTGACGATG CCAAAACCAA ACTGGAATCC  ATTTGCCCAC GCACCGTTTC CTGCGCTGAC ATTCTCGCCA TCGCGGCAAG AGATGTTGTT GTTCAGTCAG GAGGTCCTCA CTGGGAGGTG CCCAAAGGGC GCAAGGATGG AATGATATCA  AAAGCCAACG ACACGCGCAA CTTACCAGCA CCCACATTCA ACGTCTCTCA GCTCATTCAG AGCTTCGCAC TCCGTGGCCT CTCCATCAGC GATCTGGTGG CACTGTCTGG TGGGCACACG  TTGGGCTTCT CTCACTGCTC TTCCTTCGCG AGCAGGCTTC ACAACTTCAA CGCGTCGCAC AGGGTGGATC CGAGCATACA GCAGCAGTTT GCTCAGAGCC TCCGTAGCGT CTGCCCTCAG  ACCAACACCA ACCGCAGCGC AGGAGCATTT CTCGACTCAA CCGCCAACCA ATTTGACAAT ACTTATTTCC AGCATTTGCT TCAAGGCAAA GGCGTCTTCG GCTCCGACCA GTCCTTGTTT  CTGGACGATC GAACAAAGTC TCTTGTCAAC ACCTTCGCTT CCAATCAAAA AGCCTTCTTC ACTGCATTTG CAAAATCTAT GGTGAAGATG GGCAGTGTTG GAGTTAACAA GAGTGGCGGT 
CAAATCAGAA TCAACTGCAG GAAAATCAAC AATTCCTCAT GA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CGGCCTTCTC TAGTTACAAC GCCAGCATCT ACTGTCACAA TGGCTCTGCG ATTGACCGGA CTGTTAGTGC AATTTCTCCT CTACTGTACT CTTATTAATG TACACAGGGC TGAGGCTGCC  GCTGCCCCCA AACTCCGGCT CACAAAAGAT CACTACAAGC AGAGCTGCCC GAAAGTAGAG AGTGTGGTGA GAGAGACGAT ACGCAACGCA ACCAAGTTCG ATCCCAAGGT CTCTGCTCGT  ATTCTCAGGA TGCACTTCCA CGACTGCTTC ATCCGGGGGT GTGACGCCTC AGTGCTGTTG GACTCCACTC CCGGAAAGCA GGCGGAGAAG GACGCCCCTC CCAACGTATC GCTGCGCTCC  TTCTATGTCA TTGACGATGC CAAAACCAAA CTGGAATCCA TTTGCCCACG CACCGTTTCC TGCGCTGACA TTCTCGCCAT CGCGGCAAGA GATGTTGTTG TTCAGTCAGG AGGTCCTCAC  TGGGAGGTGC CCAAAGGGCG CAAGGATGGA ATGATATCAA AAGCCAACGA CACGCGCAAC TTACCAGCAC CCACATTCAA CGTCTCTCAG CTCATTCAGA GCTTCGCACT CCGTGGCCTC  TCCATCAGCG ATCTGGTGGC ACTGTCTGGT GGGCACACGT TGGGCTTCTC TCACTGCTCT TCCTTCGCGA GCAGGCTTCA CAACTTCAAC GCGTCGCACA GGGTGGATCC GAGCATACAG  CAGCAGTTTG CTCAGAGCCT CCGTAGCGTC TGCCCTCAGA CCAACACCAA CCGCAGCGCA GGAGCATTTC TCGACTCAAC CGCCAACCAA TTTGACAATA CTTATTTCCA GCATTTGCTT  CAAGGCAAAG GCGTCTTCGG CTCCGACCAG TCCTTGTTTC TGGACGATCG AACAAAGTCT CTTGTCAACA CCTTCGCTTC CAATCAAAAA GCCTTCTTCA CTGCATTTGC AAAATCTATG  GTGAAGATGG GCAGTGTTGG AGTTAACAAG AGTGGCGGTC AAATCAGAAT CAACTGCAGG AAAATCAACA ATTCCTCATG ATCACTTGAT TTCACCTTGT TTGGATTCCT GAGAATTTGT  AGAATTTAAT AATTCTGATT TCGATCAACC ACTCCACTAG ACTAGTGTAA GCAATCAGTC TGTGCCTGAG CCACGAAAAC AGATATTGGT TGTCACCCAT GCCGTGCACA TTATAATATA 
TATATGGTTG TCAATTTGCT TCCCTTG 

Retrieve as FASTA