Entry information : GbAPx-R01 (gba_locus_3836_iso_3_len_1347_ver_2)
Entry ID 13128
Creation 2015-04-13 (Christophe Dunand)
Last sequence changes 2015-04-13 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbAPx-R01 (gba_locus_3836_iso_3_len_1347_ver_2)
Name (synonym) GbAPx-R01 (gba_locus_3836_iso_3_len_1347_ver_2)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbAPx-R01
start..stop
S start..stop
PsiAPx-R 376 9e-133 134..348 1..215
VvAPx-R 369 5e-128 9..348 19..328
WmAPx-R22 367 2e-127 61..348 49..332
PtAPx-R 359 3e-124 73..348 67..335
Literature and cross-references GbAPx-R01 (gba_locus_3836_iso_3_len_1347_ver_2)
Protein sequence: GbAPx-R01 (gba_locus_3836_iso_3_len_1347_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   350
PWM (Da):   %s   38472.58  
PI (pH):   %s   7.53
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAAEVILCCT GLFKGYNQDG SPHPSLTAPR LHNLQFHYNA RRRKSVIRAM FEDKMISPPD NRGYSYQETP YRAWSTRRGI LLIASLPVVS IQNDLPLFSS DNIFNVHALQ VDEAGRQTIR  IELRKVLSKG KAAGLLRLAF HDAGTFDVAK NSGGMNGSII YELSRPENTG LNRSVKVLEK AKGELDTIMQ VSWADLIAFA GAEAVAVCGG PSILVQLGRL DTQSPDPDGE LPAESLNAAG 
LKECFQRKGF STQELVALSG AHTLGNKGFG NPTIFDNSYY QILLEKPWIK AGKGNEMSMM IGLPSDHALV EDEECLRWIT TYAKDQGKFF DDFASAYIKL TNSGAYWRKT 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq. No EST found. The 5' need to be check to confirme the prediction
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCGCAG AGGTTATACT TTGTTGTACC GGCTTGTTTA AGGGCTATAA CCAAGATGGA AGTCCTCATC CGTCTCTGAC TGCTCCCAGA CTTCACAATC TTCAATTTCA TTACAATGCC  AGGCGCAGGA AATCTGTAAT CAGAGCTATG TTTGAAGACA AGATGATTTC TCCTCCAGAT AACAGGGGCT ATTCTTACCA AGAAACCCCC TACAGAGCCT GGAGCACGAG GAGAGGGATT  CTTTTGATAG CTAGCTTGCC AGTTGTTTCA ATACAGAATG ACCTTCCACT TTTCAGTTCT GACAACATAT TTAATGTGCA TGCACTTCAG GTAGATGAAG CCGGGAGACA AACAATAAGA  ATTGAGCTGA GAAAAGTGTT GTCTAAGGGA AAAGCTGCTG GTTTGCTGCG CCTAGCGTTC CATGATGCAG GCACTTTTGA TGTGGCCAAG AATTCAGGTG GTATGAATGG ATCCATAATC  TACGAACTTA GTAGGCCTGA AAACACAGGT CTCAATCGTT CTGTCAAGGT CCTGGAGAAA GCAAAGGGAG AATTAGATAC GATTATGCAA GTGTCATGGG CAGATCTTAT AGCTTTTGCT  GGAGCGGAAG CAGTGGCAGT ATGTGGTGGT CCTAGCATTC TTGTCCAACT GGGAAGGCTA GATACACAGT CACCTGATCC AGACGGGGAA CTTCCAGCAG AGTCTTTGAA TGCTGCTGGC  CTGAAAGAAT GTTTCCAAAG GAAAGGCTTC TCAACCCAAG AGCTTGTGGC ATTGTCTGGA GCCCACACAC TAGGAAATAA AGGCTTTGGA AACCCCACAA TTTTTGACAA CTCATATTAC  CAGATACTTC TAGAGAAACC TTGGATAAAA GCAGGTAAAG GCAATGAGAT GTCAATGATG ATAGGGCTTC CATCAGATCA TGCCCTTGTT GAGGATGAAG AATGCCTTAG GTGGATAACT 
ACATATGCCA AAGATCAAGG AAAATTCTTT GATGATTTTG CTAGTGCTTA TATCAAACTT ACAAATAGTG GTGCATATTG GAGGAAGACA TAG 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAAAACTCTA CGATCTCTAT TCGAAGTGCC TCTCAAACGC AAGGACAAAA ATTTAAATAA GGTTATTAAA ACAGATAGGA TACGGGTGTC TCATATTGCC ATGAACGAAT CGTATAAATA  CAGTAGTGAG AGCTACTAGC TCACTGGCTG ATAGGTGCCT GTTCTATGGC CGCAGAGGTT ATACTTTGTT GTACCGGCTT GTTTAAGGGC TATAACCAAG ATGGAAGTCC TCATCCGTCT  CTGACTGCTC CCAGACTTCA CAATCTTCAA TTTCATTACA ATGCCAGGCG CAGGAAATCT GTAATCAGAG CTATGTTTGA AGACAAGATG ATTTCTCCTC CAGATAACAG GGGCTATTCT  TACCAAGAAA CCCCCTACAG AGCCTGGAGC ACGAGGAGAG GGATTCTTTT GATAGCTAGC TTGCCAGTTG TTTCAATACA GAATGACCTT CCACTTTTCA GTTCTGACAA CATATTTAAT  GTGCATGCAC TTCAGGTAGA TGAAGCCGGG AGACAAACAA TAAGAATTGA GCTGAGAAAA GTGTTGTCTA AGGGAAAAGC TGCTGGTTTG CTGCGCCTAG CGTTCCATGA TGCAGGCACT  TTTGATGTGG CCAAGAATTC AGGTGGTATG AATGGATCCA TAATCTACGA ACTTAGTAGG CCTGAAAACA CAGGTCTCAA TCGTTCTGTC AAGGTCCTGG AGAAAGCAAA GGGAGAATTA  GATACGATTA TGCAAGTGTC ATGGGCAGAT CTTATAGCTT TTGCTGGAGC GGAAGCAGTG GCAGTATGTG GTGGTCCTAG CATTCTTGTC CAACTGGGAA GGCTAGATAC ACAGTCACCT  GATCCAGACG GGGAACTTCC AGCAGAGTCT TTGAATGCTG CTGGCCTGAA AGAATGTTTC CAAAGGAAAG GCTTCTCAAC CCAAGAGCTT GTGGCATTGT CTGGAGCCCA CACACTAGGA  AATAAAGGCT TTGGAAACCC CACAATTTTT GACAACTCAT ATTACCAGAT ACTTCTAGAG AAACCTTGGA TAAAAGCAGG TAAAGGCAAT GAGATGTCAA TGATGATAGG GCTTCCATCA  GATCATGCCC TTGTTGAGGA TGAAGAATGC CTTAGGTGGA TAACTACATA TGCCAAAGAT CAAGGAAAAT TCTTTGATGA TTTTGCTAGT GCTTATATCA AACTTACAAA TAGTGGTGCA  TATTGGAGGA AGACATAGAA TTTCTTCACA TTCCTCTTGA AAATTTTATC TTGTAGGCAT TGTATGTTTC TTCTTAAGTT AGAGAGTATT TCATTTATAT GTCAATGTTG TGTGAAAGAA 
AAGATAAAGT AATAATGCAA ATGGAGA 

Retrieve as FASTA