Entry information : GbPrx40 (gba_locus_25300_iso_1_len_824_ver_2)
Entry ID 13132
Creation 2015-04-13 (Christophe Dunand)
Last sequence changes 2015-04-13 (Christophe Dunand)
Sequence status partial
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbPrx40 (gba_locus_25300_iso_1_len_824_ver_2)
Name (synonym) GbPrx40 (gba_locus_25300_iso_1_len_824_ver_2)
Class Class III peroxidase     [Orthogroup: Prx015]*
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx40
start..stop
S start..stop
GbPrx22 426 8e-152 1..262 74..335
PgPrx06 424 3e-151 1..262 72..333
PabPrx93 424 3e-151 1..262 72..333
PsiPrx02 424 3e-151 1..262 72..333
Literature and cross-references GbPrx40 (gba_locus_25300_iso_1_len_824_ver_2)
Protein sequence: GbPrx40 (gba_locus_25300_iso_1_len_824_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   263
PWM (Da):   %s   27930.4  
PI (pH):   %s   4.25
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
FHDCFVEGCD ASVLIASTGD NTAEKDDEEN LSLAGDGFDT VNKAKQAVEA VCPNQVSCAD ILALATRDVI GLSGGPAYNV ELGRRDGLIS KASRVHGNLP KANFDLDELI SLFASKGISQ  TDMIALSGAH TVGFSHCNQL ANRIYNFSSS NAVDPTLDPS YATQLQQACP KDVDPSIAID MDPSTPRQFD NVYYTNLQSG KGLFTSDQVL FTESTSRSTV NEFASSESSF ETAFVTGMTN 
LGRVGVKTGN QGEIRQDCSA FNS 

Retrieve as FASTA  
Remarks Partial sequence from RNA seq. No EST found. 5'end is missing.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTCCATGACT GTTTTGTTGA GGGATGTGAT GCCTCCGTGC TTATTGCATC CACCGGAGAC AATACAGCAG AGAAAGATGA CGAGGAGAAC TTATCTCTGG CAGGGGATGG ATTCGATACT  GTGAACAAGG CTAAGCAAGC TGTAGAGGCA GTGTGTCCCA ACCAGGTTTC TTGTGCAGAT ATCCTTGCTC TGGCTACCAG AGATGTTATT GGGCTGAGTG GAGGTCCTGC ATATAATGTG  GAATTAGGTC GTAGAGATGG ATTGATATCG AAGGCTTCGA GAGTGCATGG AAATCTACCA AAGGCCAACT TTGATCTCGA TGAACTGATT TCTCTGTTTG CTTCCAAGGG CATTTCACAG  ACAGACATGA TTGCACTTTC AGGGGCGCAT ACAGTAGGAT TTTCTCACTG CAATCAGTTG GCAAATAGAA TTTATAACTT CAGTTCTTCG AATGCAGTTG ATCCCACTCT GGATCCTTCA  TACGCCACAC AGCTACAACA AGCCTGCCCC AAGGACGTTG ATCCGTCAAT TGCCATAGAC ATGGATCCGT CAACTCCCAG ACAATTTGAC AATGTTTATT ACACAAACCT GCAATCTGGG  AAAGGGCTTT TCACCTCTGA TCAAGTGCTC TTCACAGAAT CCACGTCAAG AAGTACAGTG AACGAGTTTG CGTCCAGTGA AAGTTCGTTT GAAACTGCGT TTGTAACGGG CATGACAAAC 
CTTGGTCGTG TGGGAGTGAA GACAGGCAAC CAGGGAGAAA TTAGACAGGA TTGCAGTGCC TTCAATTCAT GA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTCCATGACT GTTTTGTTGA GGGATGTGAT GCCTCCGTGC TTATTGCATC CACCGGAGAC AATACAGCAG AGAAAGATGA CGAGGAGAAC TTATCTCTGG CAGGGGATGG ATTCGATACT  GTGAACAAGG CTAAGCAAGC TGTAGAGGCA GTGTGTCCCA ACCAGGTTTC TTGTGCAGAT ATCCTTGCTC TGGCTACCAG AGATGTTATT GGGCTGAGTG GAGGTCCTGC ATATAATGTG  GAATTAGGTC GTAGAGATGG ATTGATATCG AAGGCTTCGA GAGTGCATGG AAATCTACCA AAGGCCAACT TTGATCTCGA TGAACTGATT TCTCTGTTTG CTTCCAAGGG CATTTCACAG  ACAGACATGA TTGCACTTTC AGGGGCGCAT ACAGTAGGAT TTTCTCACTG CAATCAGTTG GCAAATAGAA TTTATAACTT CAGTTCTTCG AATGCAGTTG ATCCCACTCT GGATCCTTCA  TACGCCACAC AGCTACAACA AGCCTGCCCC AAGGACGTTG ATCCGTCAAT TGCCATAGAC ATGGATCCGT CAACTCCCAG ACAATTTGAC AATGTTTATT ACACAAACCT GCAATCTGGG  AAAGGGCTTT TCACCTCTGA TCAAGTGCTC TTCACAGAAT CCACGTCAAG AAGTACAGTG AACGAGTTTG CGTCCAGTGA AAGTTCGTTT GAAACTGCGT TTGTAACGGG CATGACAAAC 
CTTGGTCGTG TGGGAGTGAA GACAGGCAAC CAGGGAGAAA TTAGACAGGA TTGCAGTGCC TTCAATTCAT GACGACGTTT AATTTTTAAT TTTTTTAATA AAAT 

Retrieve as FASTA