Entry information : GbPrx44 (gba_locus_49153_iso_1_len_1135_ver_2)
Entry ID 13136
Creation 2015-04-14 (Christophe Dunand)
Last sequence changes 2015-04-14 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbPrx44 (gba_locus_49153_iso_1_len_1135_ver_2)
Name (synonym) GbPrx44 (gba_locus_49153_iso_1_len_1135_ver_2)
Class Class III peroxidase    [Orthogroup: Prx017]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx44
start..stop
S start..stop
PabPrx170 437 4e-155 6..328 10..339
PabPrx74 426 6e-151 11..328 11..333
PabPrx159 423 1e-149 11..328 17..339
PabPrx212 422 2e-149 7..328 12..339
Literature and cross-references GbPrx44 (gba_locus_49153_iso_1_len_1135_ver_2)
Protein sequence: GbPrx44 (gba_locus_49153_iso_1_len_1135_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   332 (305)
PWM (Da):   %s   35788.3 (32844.7) Transmb domain:   %s   i5-27o
PI (pH):   %s   9.83 (9.96) Peptide Signal:   %s   cut: 28 range:28-332
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRNSVCLHST VALLLIWVLV VSHTVDGHRS GLKVGYYRRT CPAAENIVRA TVAKAVKANR GVAAGLIRMH FHDCFVRGCD GSILIDSTPG NKAEKDSPTN NPSLHGFEVI DEAKAKIEAK  CPHVVSCADI LAFAARDSAY QTGKSRWQVP AGRRDGRTSR DTDIIGNLPP PSFNVDQLTQ NFAAKGLSQE DMVTLSGAHS LGVSHCSSFS SRLQSKSNGT LDPRLAATLR AKCAPQLAGI 
SDPTVAMDSF TPAILDNKYY KGLLLNRGLF TSDQTLLTNP FTSGIVHLNS KNPSLWRDKF GSAMVRMGAI DVLTGSKGEI RRNCRIINSN YY 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq. Frame shift in the assembly. No EST found.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGGAATT CAGTTTGTCT TCATTCAACT GTGGCTCTAC TGTTAATATG GGTATTGGTA GTTAGTCATA CGGTTGATGG CCACCGATCT GGGTTAAAGG TGGGCTACTA CCGCCGCACA  TGCCCTGCGG CTGAGAACAT TGTAAGAGCA ACTGTGGCCA AGGCTGTGAA GGCAAATCGT GGTGTAGCCG CGGGTCTCAT ACGGATGCAT TTTCACGATT GCTTTGTCAG AGGTTGCGAC  GGGTCAATCC TGATCGATTC CACCCCTGGA AATAAAGCAG AGAAAGATTC ACCTACGAAC AATCCCAGTC TTCATGGGTT CGAAGTAATC GACGAAGCAA AGGCCAAAAT AGAAGCCAAA  TGTCCACACG TCGTGTCGTG TGCTGACATA CTCGCCTTTG CGGCACGAGA TAGTGCATAT CAGACTGGTA AGAGTCGATG GCAGGTTCCA GCTGGAAGAA GGGACGGAAG GACATCTCGA  GACACCGATA TTATAGGAAA TCTGCCTCCT CCTTCATTCA ATGTCGACCA GTTGACACAG AATTTCGCAG CAAAGGGTCT TTCACAGGAG GACATGGTCA CTCTTTCAGG GGCACATTCT  CTAGGGGTTT CGCATTGTTC TTCATTCAGC AGTAGGCTTC AATCCAAATC CAACGGAACT CTCGACCCTC GACTTGCCGC CACGCTCAGA GCTAAATGCG CGCCCCAGTT GGCCGGAATT  TCCGACCCAA CCGTGGCCAT GGACTCTTTC ACTCCTGCTA TTCTCGATAA TAAATACTAC AAGGGCCTTC TTCTCAACCG TGGATTGTTT ACCTCCGATC AAACACTACT CACCAATCCT  TTCACCTCCG GCATAGTCCA CCTCAACTCC AAAAACCCAT CGCTCTGGCG TGACAAATTC GGCTCTGCAA TGGTAAGGAT GGGTGCGATC GACGTCTTGA CCGGATCTAA GGGCGAGATC 
AGAAGAAACT GTCGAATCAT TAATTCCAAC TATTATTAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAATTATGAG GAATTCAGTT TGTCTTCATT CAACTGTGGC TCTACTGTTA ATATGGGTAT TGGTAGTTAG TCATACGGTT GATGGCCACC GATCTGGGTT AAAGGTGGGC TACTACCGCC  GCACATGCCC TGCGGCTGAG AACATTGTAA GAGCAACTGT GGCCAAGGCT GTGAAGGCAA ATCGTGGTGT AGCCGCGGGT CTCATACGGA TGCATTTTCA CGATTGCTTT GTCAGAGGTT  GCGACGGGTC AATCCTGATC GATTCCACCC CTGGAAATAA AGCAGAGAAA GATTCACCTA CGAACAATCC CAGTCTTCAT GGGTTCGAAG TAATCGACGA AGCAAAGGCC AAAATAGAAG  CCAAATGTCC ACACGTCGTG TCGTGTGCTG ACATACTCGC CTTTGCGGCA CGAGATAGTG CATATCAGAC TGGTAAGAGT CGATGGCAGG TTCCAGCTGG AAGAAGGGAC GGAAGGACAT  CTCGAGACAC CGATATTATA GGAAATCTGC CTCCTCCTTC ATTCAATGTC GACCAGTTGA CACAGAATTT CGCAGCAAAG GGTCTTTCAC AGGAGGACAT GGTCACTCTT TCAGGGGCAC  ATTCTCTAGG GGTTTCGCAT TGTTCTTCAT TCAGCAGTAG GCTTCAATCC AAATCCAACG GAACTCTCGA CCCTCGACTT GCCGCCACGC TCAGAGCTAA ATGCGCGCCC CAGTTGGCCG  GAATTTCCGA CCCAACCGTG GCCATGGACT CTTTCACTCC TGCTATTCTC GATAATAAAT ACTACAAGGG CCTTCTTCTC AACCGTGGAT TGTTTACCTC CGATCAAACA CTACTCACCA  ATCCTTTCAC CTCCGGCATA GTCCACCTCA ACTCCAAAAA CCCATCGCTC TGGCGTGACA AATTCGGCTC TGCAATGGTA AGGATGGGTG CGATCGACGT CTTGACCGGA TCTAAGGGCG  AGATCAGAAG AAACTGTCGA ATCATTAATT CCAACTATTA TTAAATGCAT CCAAATGCGT CCTGCGCAGA ACAATTTCGA TAATTAAGTT GTCATATACG CCTGCAAAAT GATCTCCTTG 
CCAATAATCT AGTTTGCAAA ACTAGTTATA AAAAGA 

Retrieve as FASTA