Entry information : GbPrx45(Ginbil_Gb_25783)
Entry ID 13137
Creation 2015-04-14 (Christophe Dunand)
Last sequence changes 2015-04-14 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-23 (Christophe Dunand)
Peroxidase information: GbPrx45(Ginbil_Gb_25783)
Name GbPrx45(Ginbil_Gb_25783)
Class Class III peroxidase    [Orthogroup: Prx270]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx45
start..stop
S start..stop
PabPrx142 479 5e-170 1..381 11..408
GbPrx32 362 4e-125 82..381 31..329
PtaPrx28 357 4e-123 83..381 29..317
PabPrx05 352 3e-121 83..381 32..320
Literature and cross-references GbPrx45(Ginbil_Gb_25783)
Protein sequence: GbPrx45(Ginbil_Gb_25783)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   381 (355)
PWM (Da):   %s   41838.45 (39183.0) Transmb domain:   %s   i5-27o
PI (pH):   %s   5.04 (5.04) Peptide Signal:   %s   cut: 27 range:27-381
Sequence
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Send to Peroxiscan
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MYSSLFSVVT ACVGLLILII AMSTAAYSQM NGPFYKPNYP NLGSPTNDTS FDQQRSAPPF NFQPYDPNNA SFYNFTPVSP NNFYGKTCPD AERIVFDVMR QAVMNEPRIA ASILRLHFHD  CFINGCDGSI LLDDTPTFQG EKTAGANNNS ARGFDIIDNI KTQLENACPG VVSCADILAI AARDGVLLNG GPFWDTVLGR KDSRTASIDE ANKNIPFPTS DLDTLIKNFE SRGLSAEDMV  ALSGAHTIGL TRCTVFRQSL YNHSGDSRPD STIDPSFLQQ LQGRCPRSGG DELLSALDYV SPFRFDNFYY ANLKQQRGVF HSDRVLYDLA SGASTSSIVE QYSSNQSRFF EGFTRAIIKM 
GDIVPSADTP LEIRRDCRKA N 

Retrieve as FASTA  
Remarks Complete sequence from genomic (uncorrect prediction from SymDB; exons 2 and 3) and RNA seq (gba_locus_50299_iso_1_len_1505_ver_2). No EST found.
CDS
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ATGTATTCAT CATTGTTTTC TGTGGTTACA GCATGTGTAG GACTGCTTAT ACTCATCATA GCAATGAGCA CCGCTGCTTA TTCGCAGATG AATGGACCGT TTTACAAACC CAATTATCCA  AACCTCGGAA GCCCAACTAA CGATACTAGC TTCGATCAAC AACGCAGTGC GCCCCCTTTT AACTTTCAAC CATATGATCC GAACAATGCC TCGTTTTACA ATTTTACACC AGTTTCTCCA  AACAATTTTT ATGGCAAAAC ATGTCCTGAC GCAGAGAGGA TTGTTTTCGA CGTTATGCGC CAGGCTGTGA TGAATGAACC TCGCATCGCC GCATCCATAT TGCGTTTGCA TTTCCACGAT  TGTTTTATTA ATGGTTGTGA CGGCTCCATA CTTTTGGATG ACACCCCTAC ATTTCAAGGG GAGAAAACTG CGGGAGCAAA CAACAACTCC GCTAGGGGAT TTGACATAAT TGATAACATC  AAAACCCAAC TTGAAAATGC TTGTCCTGGA GTTGTCTCTT GCGCTGACAT TCTTGCCATT GCAGCCAGGG ATGGCGTTCT ATTGAATGGA GGACCTTTTT GGGATACTGT TTTGGGGAGG  AAAGACTCGA GGACAGCAAG CATTGATGAA GCAAACAAGA ACATCCCATT TCCCACATCA GATCTTGACA CTCTCATAAA AAACTTTGAA TCACGAGGGC TCTCTGCTGA AGACATGGTA  GCACTTTCAG GGGCTCATAC GATTGGACTT ACTCGATGCA CAGTATTCAG ACAAAGTTTG TATAACCATT CAGGAGATTC CCGCCCAGAC TCTACAATTG ATCCATCGTT CTTGCAACAG  CTACAAGGCC GGTGCCCTCG AAGTGGAGGA GACGAGTTGC TTTCGGCTCT AGATTATGTT AGTCCGTTTC GGTTCGATAA CTTTTACTAT GCAAACTTGA AGCAGCAGAG GGGCGTATTC  CATTCAGACC GAGTGCTTTA TGACCTCGCC TCGGGGGCTT CGACCAGCAG CATAGTCGAA CAATACTCTT CCAACCAGTC GCGTTTCTTC GAAGGCTTCA CGCGTGCTAT CATCAAAATG 
GGTGATATCG TCCCTTCTGC TGACACGCCA CTAGAAATTC GAAGGGACTG CAGAAAGGCC AACTAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATCAATATAC AGCACAATTG GTTACTTTCA TCTGTCTGTA GACTGTTATT GTGAAGAATT CTCAATACTT TGGCATAGTA GAAGTTTTTC CTAAGATGTA TTCATCATTG TTTTCTGTGG  TTACAGCATG TGTAGGACTG CTTATACTCA TCATAGCAAT GAGCACCGCT GCTTATTCGC AGATGAATGG ACCGTTTTAC AAACCCAATT ATCCAAACCT CGGAAGCCCA ACTAACGATA  CTAGCTTCGA TCAACAACGC AGTGCGCCCC CTTTTAACTT TCAACCATAT GATCCGAACA ATGCCTCGTT TTACAATTTT ACACCAGTTT CTCCAAACAA TTTTTATGGC AAAACATGTC  CTGACGCAGA GAGGATTGTT TTCGACGTTA TGCGCCAGGC TGTGATGAAT GAACCTCGCA TCGCCGCATC CATATTGCGT TTGCATTTCC ACGATTGTTT TATTAATGGT TGTGACGGCT  CCATACTTTT GGATGACACC CCTACATTTC AAGGGGAGAA AACTGCGGGA GCAAACAACA ACTCCGCTAG GGGATTTGAC ATAATTGATA ACATCAAAAC CCAACTTGAA AATGCTTGTC  CTGGAGTTGT CTCTTGCGCT GACATTCTTG CCATTGCAGC CAGGGATGGC GTTCTATTGA ATGGAGGACC TTTTTGGGAT ACTGTTTTGG GGAGGAAAGA CTCGAGGACA GCAAGCATTG  ATGAAGCAAA CAAGAACATC CCATTTCCCA CATCAGATCT TGACACTCTC ATAAAAAACT TTGAATCACG AGGGCTCTCT GCTGAAGACA TGGTAGCACT TTCAGGGGCT CATACGATTG  GACTTACTCG ATGCACAGTA TTCAGACAAA GTTTGTATAA CCATTCAGGA GATTCCCGCC CAGACTCTAC AATTGATCCA TCGTTCTTGC AACAGCTACA AGGCCGGTGC CCTCGAAGTG  GAGGAGACGA GTTGCTTTCG GCTCTAGATT ATGTTAGTCC GTTTCGGTTC GATAACTTTT ACTATGCAAA CTTGAAGCAG CAGAGGGGCG TATTCCATTC AGACCGAGTG CTTTATGACC  TCGCCTCGGG GGCTTCGACC AGCAGCATAG TCGAACAATA CTCTTCCAAC CAGTCGCGTT TCTTCGAAGG CTTCACGCGT GCTATCATCA AAATGGGTGA TATCGTCCCT TCTGCTGACA  CGCCACTAGA AATTCGAAGG GACTGCAGAA AGGCCAACTA AAATTAGACT TGCCTCGAGC CCTTTACAAC AAACCAATTT TCCTTGCTGG ACTGGCATGC ATTAAGAACC TTGGAATTTA  GCGGTCAGCC AATGTAAGAT TACCCTTTCA TCTGTAAGTA CTCCTGTCTT GAAAGCAAAC ATTTCCCGTG TTCAGAAATT GCCTCAAGTT TTGTGTAGAT GTCAAATATG ATTGTGTGAC 
GTGTCAAGAG TCGCTCTGTA TTTTTACTTT TTGGGAGAAA AAAGTCATGC TTTTATGGAT CAAAA 

Retrieve as FASTA