Entry information : GbPrx47
Entry ID 13139
Creation 2015-04-14 (Christophe Dunand)
Last sequence changes 2015-04-14 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-26 (Christophe Dunand)
Peroxidase information: GbPrx47
Name GbPrx47
Class Class III peroxidase     [Orthogroup: Prx235]*
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx47
start..stop
S start..stop
GbPrx56 527 0 4..317 3..317
RcPrx27 418 3e-148 1..317 3..318
PbPrx68 411 2e-145 2..317 4..322
PtPrx68 409 9e-145 2..317 4..322
Literature and cross-references GbPrx47
Protein sequence: GbPrx47
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317 (295)
PWM (Da):   %s   34400.3 (32073.1)  
PI (pH):   %s   8.55 (8.48) Peptide Signal:   %s   cut: 23 range:23-317
Sequence
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Send to Peroxiscan
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MSSFTKILPC VLVFLVVGHA NAQLRSDFYK KSCGNVFDLV RPVLEEAVRK EARMAASILR LHFHDCFVNG CDGSILLDDT SSFTGEKSAG PNQNSIRGFE VIDAIKTAVE KACPGVVSCA  DILTIAARDS VVLSNGPSWE VKLGRRDSTT ASLDDANRNI PVPSSTVNQL ISRFRAQGLS ARDMVALSGA HTIGKARCTT FRDRIYNETT INERYAKFVS RRCPASGGDD NLSPLDVGSA 
TRFDNGYFQN LKCEKGLLHS DQVLQSGGSS TASIVDAYSN NPSAFYKDFI QAMIKMGNNK PLTGYDGQIR RNCRIVN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no prediction from SymDB, only fragment from small contig) and RNA seq.(gba_locus_52444_iso_1_len_1168_ver_2)
CDS
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ATGTCTTCCT TCACAAAAAT TTTGCCGTGT GTTCTGGTCT TTCTCGTGGT TGGTCATGCG AATGCTCAGT TGAGAAGCGA CTTTTACAAA AAATCATGCG GAAATGTTTT CGATTTAGTC  CGCCCTGTGC TGGAAGAGGC AGTGCGCAAA GAAGCTCGAA TGGCTGCGTC TATTTTGCGC CTTCACTTCC ATGACTGCTT CGTCAATGGC TGTGACGGAT CAATACTCCT TGACGACACC  TCCTCATTTA CAGGTGAAAA GAGTGCCGGC CCCAACCAGA ACTCTATAAG AGGTTTCGAG GTTATCGACG CCATCAAAAC CGCAGTGGAA AAAGCATGCC CTGGCGTTGT GTCGTGTGCT  GATATTCTTA CCATTGCTGC TAGGGATTCC GTAGTGTTGA GCAATGGCCC CTCATGGGAA GTCAAACTGG GTAGAAGGGA CTCCACAACA GCTAGCCTAG ATGATGCTAA CAGAAACATA  CCAGTACCAT CATCGACCGT GAACCAGCTC ATTTCTAGGT TCCGAGCCCA AGGACTTTCT GCACGTGACA TGGTAGCACT TTCAGGCGCT CACACAATAG GAAAGGCGCG TTGCACAACA  TTCAGAGACA GAATTTACAA CGAGACAACA ATAAACGAAC GGTATGCCAA GTTTGTTAGT CGAAGGTGTC CTGCCTCTGG GGGAGACGAC AACTTGTCAC CTCTGGATGT CGGAAGCGCC  ACACGTTTTG ACAACGGCTA CTTCCAGAAT TTGAAATGTG AGAAAGGTCT TCTTCACTCC GACCAAGTAT TGCAGTCCGG CGGAAGCTCT ACGGCTTCTA TTGTCGACGC ATACAGCAAT 
AATCCAAGCG CCTTCTATAA AGATTTCATT CAAGCAATGA TTAAAATGGG TAACAATAAA CCGCTTACGG GTTACGATGG CCAGATACGC AGAAACTGCA GAATCGTGAA TTAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TATCTCGAGG ACTGTCTGTG TTTTATCATC TCTACTCTGC ATCTCTATCG TAAGCTGTCA CCATGTCTTC CTTCACAAAA ATTTTGCCGT GTGTTCTGGT CTTTCTCGTG GTTGGTCATG  CGAATGCTCA GTTGAGAAGC GACTTTTACA AAAAATCATG CGGAAATGTT TTCGATTTAG TCCGCCCTGT GCTGGAAGAG GCAGTGCGCA AAGAAGCTCG AATGGCTGCG TCTATTTTGC  GCCTTCACTT CCATGACTGC TTCGTCAATG GCTGTGACGG ATCAATACTC CTTGACGACA CCTCCTCATT TACAGGTGAA AAGAGTGCCG GCCCCAACCA GAACTCTATA AGAGGTTTCG  AGGTTATCGA CGCCATCAAA ACCGCAGTGG AAAAAGCATG CCCTGGCGTT GTGTCGTGTG CTGATATTCT TACCATTGCT GCTAGGGATT CCGTAGTGTT GAGCAATGGC CCCTCATGGG  AAGTCAAACT GGGTAGAAGG GACTCCACAA CAGCTAGCCT AGATGATGCT AACAGAAACA TACCAGTACC ATCATCGACC GTGAACCAGC TCATTTCTAG GTTCCGAGCC CAAGGACTTT  CTGCACGTGA CATGGTAGCA CTTTCAGGCG CTCACACAAT AGGAAAGGCG CGTTGCACAA CATTCAGAGA CAGAATTTAC AACGAGACAA CAATAAACGA ACGGTATGCC AAGTTTGTTA  GTCGAAGGTG TCCTGCCTCT GGGGGAGACG ACAACTTGTC ACCTCTGGAT GTCGGAAGCG CCACACGTTT TGACAACGGC TACTTCCAGA ATTTGAAATG TGAGAAAGGT CTTCTTCACT  CCGACCAAGT ATTGCAGTCC GGCGGAAGCT CTACGGCTTC TATTGTCGAC GCATACAGCA ATAATCCAAG CGCCTTCTAT AAAGATTTCA TTCAAGCAAT GATTAAAATG GGTAACAATA  AACCGCTTAC GGGTTACGAT GGCCAGATAC GCAGAAACTG CAGAATCGTG AATTAAGAAT AAAAGGCTTA TTGCTGTACC ATATCCCTCG AGCAGCTTTC TGTACTCAGA ATTCTCTGTT 
CATGCTCAAT TCATATTTCA TGTTAATAAT TTTTTCGTGA ACTGTGCTAA GTTGCACAAT CCATTGTATG ATCATAGAAG AGGCAAAT 

Retrieve as FASTA