Entry information : GbPrx48
Entry ID 13140
Creation 2015-04-14 (Christophe Dunand)
Last sequence changes 2015-04-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-12-01 (Christophe Dunand)
Peroxidase information: GbPrx48
Name GbPrx48
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx48
start..stop
S start..stop
GbPrx36 473 8e-169 10..330 8..330
GbPrx20 461 4e-164 1..349 1..352
GbPrx50 457 2e-162 8..352 8..358
GbPrx61 449 2e-159 1..350 1..353
Literature and cross-references GbPrx48
Protein sequence: GbPrx48
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   357 (227)
PWM (Da):   %s   39255.6 (23704.7) Transmb domain:   %s   i7-25o
PI (pH):   %s   4.48 (4.10) Peptide Signal:   %s   cut: 23 range:23-249
Sequence
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Send to Peroxiscan
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MERNSRLLGA ILTLMFILSV SAFSAKEFRD DLPEPVEGLS WRFYDESCPN VESIVNATLD SFLEEDITQA AGLLRLYFHD CFVQGCDASI LLDGTASDPS EQEAAPNLTL RAEAFEIINA  IKAAVEAVCS GVVSCADILT LATRDSIKKA GGPEYAVPLG RRDSLNYANQ SVTEQNLPPP TANVTQLMSI FGPKGFNMTD LVALLGGHSI GISHCASFTN RLYPTLDPTL DPTFAKYLYL 
ICPTNTVVNT TNLDIRTPNL FDNKYYVDLQ HRQVLFTSDE ALILNSTTRH IAKSFGQNEK LFFHRFMLAM LKLSQLDVLT GSDGEIRKNC SVSNSNSDHY SIYSIFDTDE ESPISLM 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no prediction from SymDB, scaffold787) and RNA seq (gba_locus_53356_iso_1_len_896_ver_2.: f:ragment and 3'end are missing). No EST found..
Several ORF in the scaffold.
DNA
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ATGGAGAGGA ATAGCAGGCT TCTCGGTGCT ATTTTAACTT TGATGTTTAT ATTGTCTGTC AGTGCTTTTT CTGCAAAGGA ATTCAGGGAT GATCTGCCGG AGCCAGTTGA AGGTCTTTCA  TGGAGATTCT ACGACGAGAG TTGCCCCAAC GTGGAGTCCA TAGTCAATGC TACTCTCGAC TCTTTCTTGG AAGAAGATAT CACCCAAGCT GCTGGATTGC TCAGACTCTA CTTCCACGAC  TGCTTCGTCC AGGTATAATC GCATATTTTA CATGAAATTT GCTCAATCCG AAATGTTTTT CGTTGATAGC ATGATCATAT GGACATTAAT TTCTTCTGGC AGGGCTGCGA CGCATCCATC  TTGTTAGACG GGACGGCCAG CGATCCAAGT GAGCAGGAGG CTGCTCCAAA CTTGACACTT AGAGCGGAGG CCTTCGAGAT AATTAATGCT ATCAAAGCCG CAGTCGAGGC CGTCTGCAGC  GGCGTTGTAT CGTGTGCTGA CATCCTGACT TTAGCAACTC GCGATTCCAT CAAGAAGGTG AGTAATATTC AATCTTTTTT TTATTGCTTC TCAAGGGCAA TATGCCTAAC ATCAATTTGT  TATGAATTAG GCTGGAGGAC CAGAGTATGC TGTGCCGCTT GGCCGCAGAG ACAGCCTCAA CTATGCCAAT CAATCAGTTA CTGAACAAAA CTTACCTCCT CCAACTGCGA ATGTAACACA  ATTGATGAGC ATTTTTGGTC CGAAAGGGTT TAATATGACA GATCTTGTGG CGCTTTTAGG TTAGTTGATT TTGCCCAAAA CAGTTTATGT TATATTAAAT CCAGTTTAGA GGTAGTTGAA  TTAGTCAAGA TTGAGCATCG TTAATTATTG TATTGAATGT TTTTTTTCTA CAGGTGGGCA CAGCATTGGC ATCAGCCACT GTGCCTCCTT CACAAATAGA CTGTACCCTA CTCTGGATCC  AACTCTCGAC CCAACTTTTG CAAAGTATCT ATATTTGATA TGCCCCACTA ATACCGTCGT CAACACCACC AATCTGGACA TTCGCACTCC AAATCTGTTT GACAACAAGT ACTACGTCGA  TCTACAACAT AGACAAGTCC TCTTCACCTC CGACGAGGCT CTCATCCTCA ACTCCACCAC TCGACACATC GCCAAAAGCT TCGGTCAGAA CGAGAAATTG TTCTTTCACC GCTTCATGCT  CGCAATGCTC AAGTTGTCTC AACTTGATGT ACTCACTGGA AGCGACGGGG AGATCCGCAA GAATTGCTCC GTTTCCAATT CGAATTCCGA TCACTATTCA ATATACTCGA TATTCGATAC 
AGATGAGGAA TCACCGATAT CTTTGATGTG A 

Retrieve as FASTA  
CDS
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ATGGAGAGGA ATAGCAGGCT TCTCGGTGCT ATTTTAACTT TGATGTTTAT ATTGTCTGTC AGTGCTTTTT CTGCAAAGGA ATTCAGGGAT GATCTGCCGG AGCCAGTTGA AGGTCTTTCA  TGGAGATTCT ACGACGAGAG TTGCCCCAAC GTGGAGTCCA TAGTCAATGC TACTCTCGAC TCTTTCTTGG AAGAAGATAT CACCCAAGCT GCTGGATTGC TCAGACTCTA CTTCCACGAC  TGCTTCGTCC AGGGCTGCGA CGCATCCATC TTGTTAGACG GGACGGCCAG CGATCCAAGT GAGCAGGAGG CTGCTCCAAA CTTGACACTT AGAGCGGAGG CCTTCGAGAT AATTAATGCT  ATCAAAGCCG CAGTCGAGGC CGTCTGCAGC GGCGTTGTAT CGTGTGCTGA CATCCTGACT TTAGCAACTC GCGATTCCAT CAAGAAGGCT GGAGGACCAG AGTATGCTGT GCCGCTTGGC  CGCAGAGACA GCCTCAACTA TGCCAATCAA TCAGTTACTG AACAAAACTT ACCTCCTCCA ACTGCGAATG TAACACAATT GATGAGCATT TTTGGTCCGA AAGGGTTTAA TATGACAGAT  CTTGTGGCGC TTTTAGGTGG GCACAGCATT GGCATCAGCC ACTGTGCCTC CTTCACAAAT AGACTGTACC CTACTCTGGA TCCAACTCTC GACCCAACTT TTGCAAAGTA TCTATATTTG  ATATGCCCCA CTAATACCGT CGTCAACACC ACCAATCTGG ACATTCGCAC TCCAAATCTG TTTGACAACA AGTACTACGT CGATCTACAA CATAGACAAG TCCTCTTCAC CTCCGACGAG  GCTCTCATCC TCAACTCCAC CACTCGACAC ATCGCCAAAA GCTTCGGTCA GAACGAGAAA TTGTTCTTTC ACCGCTTCAT GCTCGCAATG CTCAAGTTGT CTCAACTTGA TGTACTCACT 
GGAAGCGACG GGGAGATCCG CAAGAATTGC TCCGTTTCCA ATTCGAATTC CGATCACTAT TCAATATACT CGATATTCGA TACAGATGAG GAATCACCGA TATCTTTGAT GTGA 

Retrieve as FASTA