Entry information : GbPrx54
Entry ID 13146
Creation 2015-04-14 (Christophe Dunand)
Last sequence changes 2015-04-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-12-01 (Christophe Dunand)
Peroxidase information: GbPrx54
Name GbPrx54
Class Class III peroxidase     [Orthogroup: Prx148]*
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx54
start..stop
S start..stop
GbPrx12 547 0 14..337 13..334
GbPrx06 521 0 8..337 9..339
GbPrx42 497 9e-179 17..337 15..338
GbPrx32 465 3e-166 13..337 5..329
Literature and cross-references GbPrx54
Protein sequence: GbPrx54
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   337
PWM (Da):   %s   37063.3  
PI (pH):   %s   5.07
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MDNLSQRHGF ENVVYSQLFI ILLMLTTYSA ASDYELSPDF YEHTCPPALF IVRSVVKQAV EKEARMAASL LRLHFHDCFV LGCDASLLLD DTSTFRGEKT ANPNSNSVRG FDVFDDIKSQ  LESACPGIVS CADIVAIAAR DSVVLSGGPE WIVPLGRRDS RSASFSGANQ NIPAPNSTLQ TLITKFKRQG LNEVDLVALS GSHTIGQSRC TSFRQRLYNQ TGNGKPDLTI EESFLAELKS 
SCPSSGGDNN LSPLDFVSPT EFDNHYFNNL KEMKGLLNSD EELYANPNQL TAEIVNAYAA NEELFFNQFA ESMVKMGNIK PLTGSKGEIR HNCRRMN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (not predicted form SymDB, scaffold259) and RNA seq (gba_locus_69198_iso_1_len_614_ver_2. 5' and 3' ends are missing).
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGATAATT TATCTCAGCG TCATGGTTTT GAAAATGTTG TATATTCACA ACTATTTATA ATTCTTCTTA TGTTGACAAC TTATAGCGCT GCATCTGATT ACGAGTTGAG TCCAGATTTC  TACGAACACA CTTGCCCGCC GGCTCTGTTC ATTGTCAGGT CGGTGGTAAA GCAGGCCGTG GAAAAAGAGG CTCGAATGGC AGCATCTTTA CTTCGCCTTC ATTTCCACGA CTGTTTTGTT  CTCGTAAATC TCTTTACCTT TCATTAAAAC CTGCATTCTA CTTTACTAGT TCATCCGAAT ATCATATTTT TGTTTAATAG AATATTTATC AGTGTGAGTT CATAACATAC ATGATATATT  TGTAGGGCTG CGACGCGTCC TTGTTGTTGG ACGACACCTC CACCTTTAGA GGAGAAAAAA CAGCAAATCC CAATAGTAAT TCTGTAAGAG GATTTGACGT TTTTGATGAC ATCAAAAGCC  AACTGGAGAG CGCATGCCCT GGAATTGTGT CGTGTGCTGA CATCGTTGCC ATTGCTGCTC GCGATTCTGT TGTCCTGGTA TTCATTATTA TCGTTGCCCA ATTTACTTGA AATCTAAATT  ATATTAGCCC AGTAATATAT TTAATGTTTA AATCAATATT TCGGTTCGCA GAGTGGAGGA CCAGAGTGGA TTGTCCCACT GGGTAGAAGG GATTCAAGGA GTGCAAGCTT TAGTGGAGCG  AATCAGAACA TTCCAGCCCC AAATTCAACT CTGCAGACTC TCATCACAAA GTTCAAACGC CAAGGCCTTA ACGAAGTAGA TTTGGTTGCA CTCTCAGGTA CCGTTTGACA TTTTCAACTA  ACCATTGCAT TTTATTTAAT ATTGGCAATG GTAATGATCA TTTGATGCAA TATTGTTAAA TTTGGTGATG ATGGCAATGC AGGAAGCCAT ACCATCGGCC AGTCCCGATG CACAAGCTTC  AGGCAGAGAC TGTACAATCA GACTGGAAAT GGCAAACCTG ATTTAACCAT CGAGGAGAGT TTTCTAGCAG AATTGAAATC AAGCTGTCCA AGTTCAGGTG GAGATAACAA CTTATCACCA  TTGGATTTCG TCAGCCCAAC TGAATTTGAC AATCATTATT TCAATAACCT GAAGGAGATG AAGGGACTTT TGAATTCTGA CGAGGAACTC TATGCCAATC CTAACCAATT GACAGCGGAG  ATTGTGAATG CATACGCAGC TAACGAGGAA TTATTCTTCA ATCAGTTTGC AGAATCAATG GTGAAAATGG GCAACATAAA ACCGCTGACA GGATCCAAGG GAGAAATCCG ACACAACTGC 
CGGCGAATGA ATTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGATAATT TATCTCAGCG TCATGGTTTT GAAAATGTTG TATATTCACA ACTATTTATA ATTCTTCTTA TGTTGACAAC TTATAGCGCT GCATCTGATT ACGAGTTGAG TCCAGATTTC  TACGAACACA CTTGCCCGCC GGCTCTGTTC ATTGTCAGGT CGGTGGTAAA GCAGGCCGTG GAAAAAGAGG CTCGAATGGC AGCATCTTTA CTTCGCCTTC ATTTCCACGA CTGTTTTGTT  CTCGGCTGCG ACGCGTCCTT GTTGTTGGAC GACACCTCCA CCTTTAGAGG AGAAAAAACA GCAAATCCCA ATAGTAATTC TGTAAGAGGA TTTGACGTTT TTGATGACAT CAAAAGCCAA  CTGGAGAGCG CATGCCCTGG AATTGTGTCG TGTGCTGACA TCGTTGCCAT TGCTGCTCGC GATTCTGTTG TCCTGAGTGG AGGACCAGAG TGGATTGTCC CACTGGGTAG AAGGGATTCA  AGGAGTGCAA GCTTTAGTGG AGCGAATCAG AACATTCCAG CCCCAAATTC AACTCTGCAG ACTCTCATCA CAAAGTTCAA ACGCCAAGGC CTTAACGAAG TAGATTTGGT TGCACTCTCA  GGAAGCCATA CCATCGGCCA GTCCCGATGC ACAAGCTTCA GGCAGAGACT GTACAATCAG ACTGGAAATG GCAAACCTGA TTTAACCATC GAGGAGAGTT TTCTAGCAGA ATTGAAATCA  AGCTGTCCAA GTTCAGGTGG AGATAACAAC TTATCACCAT TGGATTTCGT CAGCCCAACT GAATTTGACA ATCATTATTT CAATAACCTG AAGGAGATGA AGGGACTTTT GAATTCTGAC  GAGGAACTCT ATGCCAATCC TAACCAATTG ACAGCGGAGA TTGTGAATGC ATACGCAGCT AACGAGGAAT TATTCTTCAA TCAGTTTGCA GAATCAATGG TGAAAATGGG CAACATAAAA 
CCGCTGACAG GATCCAAGGG AGAAATCCGA CACAACTGCC GGCGAATGAA TTGA 

Retrieve as FASTA