Entry information : BnPrx36-1A_other
Entry ID 1317
Creation 2007-01-11 (Christophe Dunand)
Last sequence changes 2017-04-11 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2017-04-24 (Christophe Dunand)
Peroxidase information: BnPrx36-1A_other
Name BnPrx36-1A_other
Class Class III peroxidase     [Orthogroup: Prx004]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue types Embryos
Seed coats
Seeds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnPrx36-1A_other
start..stop
S start..stop
BrPrx36-1Aa_other 664 0 1..320 1..320
BoPrx36_other 637 0 1..320 1..320
BnPrx36-1C_other 632 0 1..320 1..320
TsPrx36 571 0 1..320 1..320
Literature and cross-references BnPrx36-1A_other
Literature Malik,M., Wang,F., Ferrie,A., Dirpaul,J. and Krochko,J. ESTs from Brassica napus microspores and early microspore-derived embryos. Plant Physiol. 144 (1), 134-154 (2007).
EST ref. GenBank:   DY022373 [5' end]
Protein sequence: BnPrx36-1A_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320 (296)
PWM (Da):   %s   35257.31 (32615.9)  
PI (pH):   %s   5.38 (5.01) Peptide Signal:   %s   cut: 25 range:25-320
Sequence
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Send to Peroxiscan
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MAKPVMCIVL TQIVLVALFH LCMSSQTKEC TSTSSLSPQF YDNSCPKAQA IVQSFVAKAH SNDPRMAASL LRLHFHDCFV NGCDGSLLLD NSGTIESEKR AVTNVDSARG FEVIDDIKSA  LEDECPQTVS CADILALVAR DTTVITGGPS WEVYLGRRDA REACLIASNN NIPVVSSTFE TIVTKFNDQG LGLIDLVALL GGHTIGNSRC KSFRKRLYNH SGNSDRDQTL NQNYASMLQQ 
GCPISGDDQN LFALDYMTPN KFDNYYFKNL MTFKGLLSSD EILYTKSRDS MELVKLYGAN EELFFEQYAK SMVKMGNISP 

Retrieve as FASTA  
Remarks Partial sequence from 4 ESTs: DY022373 (frame shift) and CD817798 (frame shift and stop codon). Short 3' end is missing. Cultivar="Topas"
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCAAAGC CAGTGATGTG CATTGTTCTC ACTCAAATCG TCCTCGTTGC CTTATTTCAT CTTTGTATGA GTTCTCAAAC CAAAGAATGC ACGAGCACAT CCTCCCTCTC CCCTCAGTTT  TACGACAACT CGTGCCCTAA AGCACAAGCC ATTGTCCAAT CTTTCGTCGC CAAAGCACAC TCCAACGACC CTCGCATGGC AGCCTCATTG CTTAGGCTTC ATTTCCATGA CTGCTTCGTC  AATGGATGTG ATGGTTCTTT ATTATTAGAC AATAGTGGAA CCATAGAAAG CGAGAAACGA GCAGTCACAA ACGTAGACTC TGCCCGAGGG TTTGAAGTCA TCGACGATAT CAAGTCTGCC  TTGGAAGATG AGTGTCCCCA AACAGTTTCT TGCGCTGATA TTTTGGCTCT CGTTGCTAGA GACACTACTG TTATTACTGG TGGCCCGAGT TGGGAAGTAT ATTTAGGAAG AAGAGATGCA  AGGGAAGCAT GCTTGATTGC TTCTAACAAC AATATTCCTG TTGTCAGCTC TACGTTTGAG ACAATTGTCA CCAAGTTCAA CGACCAAGGG CTCGGTCTTA TCGATCTTGT TGCTCTCTTA  GGAGGTCATA CGATAGGAAA TTCGAGGTGC AAGAGCTTCC GAAAAAGGCT ATACAACCAT TCTGGAAATA GCGATCGCGA CCAGACTTTG AATCAAAACT ACGCCTCAAT GTTGCAGCAG  GGATGTCCTA TTTCTGGTGA CGACCAGAAC CTCTTTGCTC TCGACTATAT GACGCCAAAT AAGTTTGATA ACTACTACTT CAAGAATCTG ATGACGTTTA AAGGACTCCT GAGCTCTGAT  GAGATTTTGT ACACAAAGAG TCGAGACTCC ATGGAGCTGG TCAAGCTTTA CGGGGCGAAT GAGGAATTGT TCTTTGAGCA GTATGCAAAG TCAATGGTGA AGATGGGAAA CATCTCGCCG 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAATAATCAC TAGTCCCAAA AACTCGAAAA AGAATCAAAT GGCAAAGCCA GTGATGTGCA TTGTTCTCAC TCAAATCGTC CTCGTTGCCT TATTTCATCT TTGTATGAGT TCTCAAACCA  AAGAATGCAC GAGCACATCC TCCCTCTCCC CTCAGTTTTA CGACAACTCG TGCCCTAAAG CACAAGCCAT TGTCCAATCT TTCGTCGCCA AAGCACACTC CAACGACCCT CGCATGGCAG  CCTCATTGCT TAGGCTTCAT TTCCATGACT GCTTCGTCAA TGGATGTGAT GGTTCTTTAT TATTAGACAA TAGTGGAACC ATAGAAAGCG AGAAACGAGC AGTCACAAAC GTAGACTCTG  CCCGAGGGTT TGAAGTCATC GACGATATCA AGTCTGCCTT GGAAGATGAG TGTCCCCAAA CAGTTTCTTG CGCTGATATT TTGGCTCTCG TTGCTAGAGA CACTACTGTT ATTACTGGTG  GCCCGAGTTG GGAAGTATAT TTAGGAAGAA GAGATGCAAG GGAAGCATGC TTGATTGCTT CTAACAACAA TATTCCTGTT GTCAGCTCTA CGTTTGAGAC AATTGTCACC AAGTTCAACG  ACCAAGGGCT CGGTCTTATC GATCTTGTTG CTCTCTTAGG AGGTCATACG ATAGGAAATT CGAGGTGCAA GAGCTTCCGA AAAAGGCTAT ACAACCATTC TGGAAATAGC GATCGCGACC  AGACTTTGAA TCAAAACTAC GCCTCAATGT TGCAGCAGGG ATGTCCTATT TCTGGTGACG ACCAGAACCT CTTTGCTCTC GACTATATGA CGCCAAATAA GTTTGATAAC TACTACTTCA  AGAATCTGAT GACGTTTAAA GGACTCCTGA GCTCTGATGA GATTTTGTAC ACAAAGAGTC GAGACTCCAT GGAGCTGGTC AAGCTTTACG GGGCGAATGA GGAATTGTTC TTTGAGCAGT 
ATGCAAAGTC AATGGTGAAG ATGGGAAACA TCTCGCCG 

Retrieve as FASTA