Entry information : BnPrx48-2_other
Entry ID 1318
Creation 2008-11-27 (Christophe Dunand)
Last sequence changes 2012-05-07 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-05-07 (Christophe Dunand)
Peroxidase information: BnPrx48-2_other
Name BnPrx48-2_other
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue types Embryonic tissue
Embryos
Germinating seeds
Seeds
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnPrx48-2_other
start..stop
S start..stop
CrubPrx99 195 2e-61 52..194 75..216
AfpPrx02 191 3e-61 57..193 15..150
BrPrx48-1Aa_other 194 4e-61 7..194 22..212
TsPrx48-2 194 4e-61 57..194 82..218
Literature and cross-references BnPrx48-2_other
Literature Xiang,D., Venglat,P., Keller,G., Selvaraj,G. and Datla,R. Gene Expression Patterns during Brassica Zygotic Embryogenesis.
EST ref. GenBank:   CN735106 [5' end]
Protein sequence: BnPrx48-2_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   194
PWM (Da):   %s   21367.98  
PI (pH):   %s   7.89
Sequence
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Send to Peroxiscan
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MFASLYLEIE NGGIQVKKTA SANLSVVSGG DDMIGNRRHQ HPDEAEHSSP PLLRRFFYDE SCPSAERIIR RSLRVLYRGK PSIAPALIRL LFHDCFIQGC DASVLLDSTD SFKSEKDAAP 
NLRSLKGMEI IDQIKSDLEH VCPRVVSCAD IIALSAREAV KLSGGPRYPL KTGRRDSFVA FMDKALTELP SPHA 

Retrieve as FASTA  
Remarks Partial sequence from 5 ESTs, 3'end is missing.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTTCGCAT CCCTATACCT GGAAATAGAA AACGGTGGGA TCCAGGTGAA GAAGACTGCT TCGGCGAACC TTTCGGTTGT GTCCGGTGGC GACGATATGA TCGGAAACAG GCGTCATCAA  CATCCAGACG AGGCGGAGCA TTCGTCGCCG CCGCTGCTGA GGAGGTTTTT CTACGATGAG TCGTGTCCTT CCGCTGAGAG GATAATCAGG AGAAGCTTAC GAGTCCTGTA CCGAGGGAAG  CCTAGCATAG CTCCGGCTCT AATCCGCCTA CTCTTCCACG ATTGCTTCAT CCAGGGATGT GATGCATCGG TGCTACTAGA CTCTACGGAC TCCTTCAAGT CTGAGAAGGA CGCTGCTCCC  AATCTGCGGT CCTTGAAAGG CATGGAGATC ATCGACCAGA TCAAGAGTGA TCTCGAGCAT GTTTGTCCCC GCGTAGTATC ATGCGCTGAT ATCATCGCTT TGTCTGCCCG TGAAGCGGTG 
AAACTGTCTG GGGGTCCTCG ATACCCATTA AAAACGGGAA GAAGAGACAG TTTTGTCGCC TTCATGGACA AAGCTCTTAC TGAGCTTCCT TCACCTCATG CT 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTTCGCAT CCCTATACCT GGAAATAGAA AACGGTGGGA TCCAGGTGAA GAAGACTGCT TCGGCGAACC TTTCGGTTGT GTCCGGTGGC GACGATATGA TCGGAAACAG GCGTCATCAA  CATCCAGACG AGGCGGAGCA TTCGTCGCCG CCGCTGCTGA GGAGGTTTTT CTACGATGAG TCGTGTCCTT CCGCTGAGAG GATAATCAGG AGAAGCTTAC GAGTCCTGTA CCGAGGGAAG  CCTAGCATAG CTCCGGCTCT AATCCGCCTA CTCTTCCACG ATTGCTTCAT CCAGGGATGT GATGCATCGG TGCTACTAGA CTCTACGGAC TCCTTCAAGT CTGAGAAGGA CGCTGCTCCC  AATCTGCGGT CCTTGAAAGG CATGGAGATC ATCGACCAGA TCAAGAGTGA TCTCGAGCAT GTTTGTCCCC GCGTAGTATC ATGCGCTGAT ATCATCGCTT TGTCTGCCCG TGAAGCGGTG 
AAACTGTCTG GGGGTCCTCG ATACCCATTA AAAACGGGAA GAAGAGACAG TTTTGTCGCC TTCATGGACA AAGCTCTTAC TGAGCTTCCT TCACCTCATG CTTC 

Retrieve as FASTA