Entry information : GbPrx03(Ginbil_Gb_09283 / Ginbil_2038998_SGTW)
Entry ID 1319
Creation 2005-06-21 (Christophe Dunand)
Last sequence changes 2015-02-13 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-11-23 (Christophe Dunand)
Peroxidase information: GbPrx03(Ginbil_Gb_09283 / Ginbil_2038998_SGTW)
Name GbPrx03(Ginbil_Gb_09283 / Ginbil_2038998_SGTW)
Class Class III peroxidase    [Orthogroup: Prx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue types Leaves
Ovule
Sporophyll
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx03
start..stop
S start..stop
CmichPrx07 539 0 4..363 1..361
PabPrx45 530 0 34..351 67..386
PtaPrx42 468 8e-167 35..353 31..346
PabPrx02 464 5e-165 35..344 29..338
Literature and cross-references GbPrx03(Ginbil_Gb_09283 / Ginbil_2038998_SGTW)
Literature Brenner,E.D., Twigg,R.W., Runko,S.J., Katari,M.S., Dedhia,N.N., O'Shaughnessy,A.L., Balija,V., Martienssen,R.A., McCombie,R.W., Benfey,P., Coruzzi,G. and Stevenson,D. Expressed tag sequences from Ginkgo megasporophyll
EST ref. GenBank:   EX931086.1 [5' end]   DR073290.1 [3' end]   DR063814 [Fragment]
Protein sequence: GbPrx03(Ginbil_Gb_09283 / Ginbil_2038998_SGTW)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   363 (330)
PWM (Da):   %s   39463.28 (35756.3) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.31 (7.70) Peptide Signal:   %s   cut: 34 range:34-363
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSMMKKKLGF LPIYIWLFSV LVVLNLAPAT CQADEPALVK GLSWTFYRKS CPGLEAIVKK RIDFFLRQDI TQAAGILRLH FHDCFVQGCD ASVLLDGSAS GPSEQDAPPN LTLRPKAFEI  IDDIKKNVDA ICSKTVSCAD ITALATRESV KKAGGPTYRV PLGRRDGLTF ATRNVTLANL PGPRSNVTAL IKAFQSKSLD TTDLVALSGG HTIGIGHCSS FTNRLYPTQA TSLENEFAQS  LYRICPTSTT NSTTDLDVRT PNVFDNKYYV DLVQNQVLFT SDQTLLTNSE TKKIVESFAS NQTLFFQKFG RAMIKMGQVS VLTGKQGEVR ANCSARNPTS YSSVISTVVD DEIVGVEDAL 
SAM 

Retrieve as FASTA  
Remarks Complete sequence from genomic (uncorrect prediction from SymDB), 17 ESTs (Vicogenta database: ip70e07.g1.b) and RNA seq (gba_locus_9912_iso_9_len_1519_ver_2).
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGTCTATGA TGAAGAAGAA ACTCGGTTTT CTTCCCATAT ACATTTGGTT ATTTTCGGTG CTTGTTGTGT TGAATTTAGC TCCTGCAACA TGTCAGGCCG ATGAGCCTGC CCTCGTGAAA  GGTCTGTCCT GGACATTTTA TCGCAAGAGC TGCCCTGGTT TGGAAGCCAT AGTGAAGAAA CGCATTGATT TCTTCCTTCG CCAAGACATC ACTCAAGCGG CAGGCATATT GCGGCTGCAT  TTCCACGATT GCTTTGTGCA GGGCTGCGAT GCGTCGGTGT TGTTAGACGG TTCAGCAAGC GGGCCAAGTG AGCAAGACGC TCCACCGAAT TTGACTTTGC GACCAAAAGC TTTCGAGATC  ATCGACGATA TCAAGAAAAA TGTCGACGCC ATTTGCTCTA AAACTGTCTC CTGCGCTGAT ATCACAGCTT TGGCTACACG TGAGTCTGTG AAGAAGGCTG GAGGACCGAC TTATCGAGTA  CCATTGGGTC GCAGAGATGG TCTCACGTTT GCCACCAGAA ACGTGACATT GGCCAATCTC CCAGGTCCTA GGTCCAATGT CACCGCCCTG ATCAAGGCTT TCCAATCCAA ATCTCTGGAC  ACAACCGACC TTGTGGCACT CTCCGGAGGG CACACCATAG GAATTGGGCA CTGCTCCTCG TTCACTAACA GATTATATCC CACGCAGGCC ACTAGCTTGG AGAATGAATT TGCCCAGAGC  CTGTATAGAA TATGCCCTAC AAGCACAACT AATAGCACGA CTGATTTGGA CGTCCGCACC CCCAATGTAT TTGATAACAA ATACTATGTA GATTTGGTGC AGAACCAAGT GCTATTCACT  TCTGATCAGA CACTACTTAC GAATTCTGAA ACCAAGAAAA TTGTGGAGAG TTTCGCATCG AATCAAACGT TATTTTTTCA GAAATTTGGG AGGGCGATGA TAAAGATGGG GCAAGTGAGC  GTCCTGACGG GAAAGCAGGG AGAGGTTCGA GCGAACTGCT CTGCCCGCAA CCCAACGTCA TACTCGTCCG TCATCAGCAC TGTGGTGGAC GACGAAATCG TCGGCGTCGA AGATGCTTTG 
TCGGCCATGT GA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAACCGCTCT TCCGATCTCG AAAATAAGCA GCCAGAGGTT AGGTTGCCTT TGAAAAAGTT GTCACATCGG AATGTCTATG ATGAAGAAGA AACTCGGTTT TCTTCCCATA TACATTTGGT  TATTTTCGGT GCTTGTTGTG TTGAATTTAG CTCCTGCAAC ATGTCAGGCC GATGAGCCTG CCCTCGTGAA AGGTCTGTCC TGGACATTTT ATCGCAAGAG CTGCCCTGGT TTGGAAGCCA  TAGTGAAGAA ACGCATTGAT TTCTTCCTTC GCCAAGACAT CACTCAAGCG GCAGGCATAT TGCGGCTGCA TTTCCACGAT TGCTTTGTGC AGGGCTGCGA TGCGTCGGTG TTGTTAGACG  GTTCAGCAAG CGGGCCAAGT GAGCAAGACG CTCCACCGAA TTTGACTTTG CGACCAAAAG CTTTCGAGAT CATCGACGAT ATCAAGAAAA ATGTCGACGC CATTTGCTCT AAAACTGTCT  CCTGCGCTGA TATCACAGCT TTGGCTACAC GTGAGTCTGT GAAGAAGGCT GGAGGACCGA CTTATCGAGT ACCATTGGGT CGCAGAGATG GTCTCACGTT TGCCACCAGA AACGTGACAT  TGGCCAATCT CCCAGGTCCT AGGTCCAATG TCACCGCCCT GATCAAGGCT TTCCAATCCA AATCTCTGGA CACAACCGAC CTTGTGGCAC TCTCCGGAGG GCACACCATA GGAATTGGGC  ACTGCTCCTC GTTCACTAAC AGATTATATC CCACGCAGGC CACTAGCTTG GAGAATGAAT TTGCCCAGAG CCTGTATAGA ATATGCCCTA CAAGCACAAC TAATAGCACG ACTGATTTGG  ACGTCCGCAC CCCCAATGTA TTTGATAACA AATACTATGT AGATTTGGTG CAGAACCAAG TGCTATTCAC TTCTGATCAG ACACTACTTA CGAATTCTGA AACCAAGAAA ATTGTGGAGA  GTTTCGCATC GAATCAAACG TTATTTTTTC AGAAATTTGG GAGGGCGATG ATAAAGATGG GGCAAGTGAG CGTCCTGACG GGAAAGCAGG GAGAGGTTCG AGCGAACTGC TCTGCCCGCA  ACCCAACGTC ATACTCGTCC GTCATCAGCA CTGTGGTGGA CGACGAAATC GTCGGCGTCG AAGATGCTTT GTCGGCCATG TGAGTTTGTT TGCCATCAAT CAAAAGACCG GAGTCCATGG  ATATTTTCTC GGAAATATTA TATTTTACAT CCTTATGTTT GTATTCCCGC GTGTAGTTAT TTATCCGCGT ATACGTCAGC ACATCATTCC CTACCGTTTC GTTTAAATTT TTGTTTTCGA  AGTTATGGTC TTTACAGCGT TGTAAGAGTT ACAGTGTTTT TTTTTTTTAA TTTTGCTTGA CAAAGCAAGG GACATGGGTT GAATGTTTGG ACGATATTTT ATTTAATCCT AGACTTGCTT 
ATACCTAGTT CCAATGTTAT ACTATGTTAT GATATATGAT ATAAAATTTT GGACTTGTTT TTTAATTTCA AACCAACTT 

Retrieve as FASTA