Entry information : SpolPrx11 (Spipo18G0026800)
Entry ID 13211
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-09 (Christophe Dunand)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-02-26 (Catherine Mathe)
Peroxidase information: SpolPrx11 (Spipo18G0026800)
Name (synonym) SpolPrx11 (Spipo18G0026800)
Class Class III peroxidase    [Orthogroup: Prx183]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx11
start..stop
S start..stop
SpolPrx15 458 4e-164 1..319 1..316
SpolPrx27 417 7e-148 1..319 1..313
SpolPrx13 416 1e-147 18..319 20..320
RcPrx27 379 1e-132 13..319 13..318
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2098060..2098272 213 N° 2 2098346..2098534 189 N° 3 2098633..2099190 558  
join(2098060..2098272,2098346..2098534,2098633..2099190)


exon

Literature and cross-references SpolPrx11 (Spipo18G0026800)
DNA ref. Phytozome 12:   pseudo18 (2098060..2099190)
Cluster/Prediction ref. Phytozome Gene 12:   31518581
Protein sequence: SpolPrx11 (Spipo18G0026800)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   320 (295)
PWM (Da):   %s   33827.93 (31222.6) Transmb domain:   %s   i5-27o
PI (pH):   %s   4.76 (4.65) Peptide Signal:   %s   cut: 25 range:25-319
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAATCSVSLGTLLVLLLYVFTSHAQLTANFYSSSCPNLETIVQSATQTAVTNNPRTPASLLRLFFHDCFVQGCDGSVLLNDTPTFTGEQSARANRELKALDVIEDIKSAVEASCNGVVSCADILALATRDGVVLSGGPSWTVPLGRRDATTASLNEANINLPGPSSSLSALITRFASKGLSLQELVALSGAHTVGFAPCRAFRNRIYNDANIDLPFANSLKAICPPSSPNGDENLSPIDISTPTAFDNAYYRNLLSLRGLLHSDQELFNNGSADSIVQSYADSSSIFFTDFATAMVNLGSIDPLTGPNGEIRRVCSRVN*

Retrieve as FASTA  
Remarks
Promoter
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Send to cis Analysis
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AACCTACGAG CAGCAATCTC CATTTTAGTC GTAACTCTCT CTCTCTCCTC CCTCCTACAG GGGGGAGGAG GTTGCATAGC GAGAGAGGAC GGATGAGGGG AGACTACCAT TTGCACCAAC  CGAATTTCAA ACGCAGGAAA GGGATTTTCT TTGACCTCTT GTAAGGAGGC ATCATATGCT AACCCTGTAT GTACGTCGGC ATTATCAGAT CTTTGGATAT CAGCGATGAA GATGTTCATC  GTTAAGAACT TGGATTGATC TTAGTGGACC ATACCGGACT TTGTGCCACG CTTGAAGATC ACATTTTCTG AAATGACGTT TTCCCTTTAA GAAATCTCGA TCTTTATCGT CAGAGGTTGC  TCTTCCCGTT CGATCGCCGC AAAGCTGACT TACCTGGAAG GCTTGGCGAC ACGCAAGACC TACCCATCGG GAATGTCAAT ATCATTCCAA CTACTAGTAC TCCCCAAGAA CTAAATGATC  GACAGAGATC TGGAAACGTG GATGAGCAAG CATTTGACCA GGAAGATGGT CAAAGATCCT GACTTTTCCA CGCGGGGGGT CCCCACAATT AATTATGCGT GGTCAGCAGT TCGGGTGTCT  CTTAATCAAT CACGTTCCCC AGACCTTTCG AAGCCTGGCA GGCCTGTTAA TTATATACAT TATCCACTGG GGAGTGGAGG GAGATCTTCA CCAATGCAAA GAAATCTGTT AAAGTTGAGG  ATTGATGACC AAATGCAGGC ACCTGGATTA CTAGACTTTT CACGACATCC AACTAGTACA GATTCCTGGA AAGTGAGTCC TGGGTGGACC CTAATGAAGT CCACTCTACC CCGGCCATCC  ATATGCACTC CCCGCTCTCT CTCTCCCCCG TCATCCATCC TTTACTAACT TAAAACTTAC AGGAGTCGCT CCTTTGCCCT AGCTCAGTTC TTTTTACACG CTCGTGTTTC ATTCTTTCTT  AAGGGGAAGG ACATTCTTGA GCGGTAGTCA AACAGAAAAA AATATATGGG TAGCGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGCGT ACnnnnnnnn nnnnnnnnnn nnAGAGAGAG  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGCGACTT TTTGTTAGGT GAATGATCGC AACAGATTTT CTTATGAAAA ACGATTCTTT TTGGAAACAA AGTTTGTCAA TCTTATCCTC  TCTGTCAGAT CGTCCTTCAA TTGGCGATTG ATGTTGGTAG ATCGTAAACA TTCCCTTCGA AGACCTGTCA TGATCATGTT CCCTGTCAAA TACTTGTAAA ATTTTTCAAT TATAGAAACA  AAAGAGTGAA AAATTTTGTA TATATTTGTC GAACAATCTA TCACGAAATA TTTATAAAAT AAATAAAAAA CATTATTAGG ATATTTGGAA ATATTACGAT AGTGTAAGTA ACACGCAAGC  ACACTTTTCC ATCGTAAATA TTAGCATTAA GTTCTTCAGG GAAGATTATG TGCCCATGAA AATATCTTTT AAGATTCTTT TCTTTGTTGC CATCAGTTGT GGGGTAACCC TGTCGGACTC  TTGATGGTCA CATTTCCACA GAATAAAGAC TAGACCAAGT ACTTGTAGAA CGGGTTGATG GGCAACGGGA CCTCATTTTG ACTATTGACA ATTTGAAAAC CTAGATGTAA TTTAGAGCAT  CACCAGAATG CGCTTTAACG TATCGGATTT GGTGACCCGG GGATTCGTCG AATGCGACGT ATATGCAATA AAAACCGTGG ACCACCTCTC TGCCTGCCGC CCTTTATTCC ACGTTATCAG  AGATGGGAAT ATCAACATCC GTCGCTTCCG CTGTTGACTT GGAAAAATAA CGCCGAACAA CGTCGGCGAA GAGCCTTCCC TTGTTCTATA TGAGGGGCAC CAGTTCCGCA AGAGCTTCAC  CACGACACAC TCCGGTAAGC GCGACATCTT CATTTAGCGA GAGAGAGTGA TAGAGAGAAG GCGTCTTTCC ATCGCTAGAA ATGGCGGCCA CATGCAGCGT CTCGCTTGGC ACCCTCCTCG  TCCTCCTCCT TTATGTGTTC ACGTCACACG CGCAACTGAC GGCGAACTTC TACTCGTCTA GCTGCCCCAA CTTGGAGACG ATCGTGCAAA GTGCCACGCA AACAGCCGTC ACGAACAACC  CCCGCACGCC CGCCTCCCTG CTCCGCCTCT TCTTTCACGA CTGCTTCGTT CAGGTAAGCG CATGCAGAGA CTGTTGTACA TGACGGACAG CCAGTCCTTA TCGCCGCCGC ACATGTGGTC  CTGCAGGGCT GCGACGGATC GGTGCTCCTA AACGACACCC CGACGTTCAC TGGGGAGCAG AGCGCCCGGG CAAACAGAGA ACTTAAAGCC CTGGACGTCA TCGAGGACAT CAAGTCCGCC  GTCGAGGCGT CATGCAACGG CGTCGTATCA TGCGCCGACA TCCTGGCCCT CGCCACCAGG GACGGCGTCG TCCTGGTGAG TTGTTCTCCT CGACATCGTT GGGATCGTCC CCGTCGATTC  TCCGGCGACC AAACTCGCAG TCTAACCAGA GGAGGCTGGC TTCTTCAATG CAGAGCGGAG GGCCCTCGTG GACAGTGCCC CTCGGGCGGC GGGACGCCAC AACGGCCAGC CTGAACGAAG  CCAACATCAA CCTCCCTGGT CCGTCGTCTA GCCTCTCTGC CCTCATCACC AGGTTCGCCA GCAAGGGCCT GAGCTTGCAG GAACTCGTGG CCCTCTCCGG CGCGCACACC GTCGGTTTTG  CCCCCTGCCG CGCCTTCCGC AACCGCATCT ACAACGACGC TAACATCGAC CTCCCCTTCG CCAACTCCCT CAAGGCCATC TGCCCGCCGT CTTCTCCGAA CGGAGACGAG AACCTCTCGC  CGATCGACAT CAGTACACCG ACGGCCTTCG ACAACGCCTA CTACAGAAAC CTCCTATCCT TGCGGGGTCT CCTTCACTCC GACCAGGAGC TCTTCAATAA CGGCTCTGCG GATTCCATCG  TCCAAAGCTA CGCAGATAGC AGCTCCATCT TCTTCACAGA CTTCGCGACG GCGATGGTAA ATTTGGGCAG CATCGACCCC CTCACCGGTC CCAATGGGGA GATCAGGCGG GTCTGCAGCA 
GGGTGAACTG A 

Retrieve as FASTA  
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCCACATGCAGCGTCTCGCTTGGCACCCTCCTCGTCCTCCTCCTTTATGTGTTCACGTCACACGCGCAACTGACGGCGAACTTCTACTCGTCTAGCTGCCCCAACTTGGAGACG
ATCGTGCAAAGTGCCACGCAAACAGCCGTCACGAACAACCCCCGCACGCCCGCCTCCCTGCTCCGCCTCTTCTTTCACGACTGCTTCGTTCAG
GTAAGCGCATGCAGAGACTGTTGTACA
TGACGGACAGCCAGTCCTTATCGCCGCCGCACATGTGGTCCTGCAGGGCTGCGACGGATCGGTGCTCCTAAACGACACCCCGACGTTCACTGGGGAGCAGAGCGCCCGGGCAAACAGAGA
ACTTAAAGCCCTGGACGTCATCGAGGACATCAAGTCCGCCGTCGAGGCGTCATGCAACGGCGTCGTATCATGCGCCGACATCCTGGCCCTCGCCACCAGGGACGGCGTCGTCCTG
GTGAG
TTGTTCTCCTCGACATCGTTGGGATCGTCCCCGTCGATTCTCCGGCGACCAAACTCGCAGTCTAACCAGAGGAGGCTGGCTTCTTCAATGCAGAGCGGAGGGCCCTCGTGGACAGTGCCC
CTCGGGCGGCGGGACGCCACAACGGCCAGCCTGAACGAAGCCAACATCAACCTCCCTGGTCCGTCGTCTAGCCTCTCTGCCCTCATCACCAGGTTCGCCAGCAAGGGCCTGAGCTTGCAG
GAACTCGTGGCCCTCTCCGGCGCGCACACCGTCGGTTTTGCCCCCTGCCGCGCCTTCCGCAACCGCATCTACAACGACGCTAACATCGACCTCCCCTTCGCCAACTCCCTCAAGGCCATC
TGCCCGCCGTCTTCTCCGAACGGAGACGAGAACCTCTCGCCGATCGACATCAGTACACCGACGGCCTTCGACAACGCCTACTACAGAAACCTCCTATCCTTGCGGGGTCTCCTTCACTCC
GACCAGGAGCTCTTCAATAACGGCTCTGCGGATTCCATCGTCCAAAGCTACGCAGATAGCAGCTCCATCTTCTTCACAGACTTCGCGACGGCGATGGTAAATTTGGGCAGCATCGACCCC
CTCACCGGTCCCAATGGGGAGATCAGGCGGGTCTGCAGCAGGGTGAACTGA

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCCACATGCAGCGTCTCGCTTGGCACCCTCCTCGTCCTCCTCCTTTATGTGTTCACGTCACACGCGCAACTGACGGCGAACTTCTACTCGTCTAGCTGCCCCAACTTGGAGACG
ATCGTGCAAAGTGCCACGCAAACAGCCGTCACGAACAACCCCCGCACGCCCGCCTCCCTGCTCCGCCTCTTCTTTCACGACTGCTTCGTTCAG
GGCTGCGACGGATCGGTGCTCCTAAAC
GACACCCCGACGTTCACTGGGGAGCAGAGCGCCCGGGCAAACAGAGAACTTAAAGCCCTGGACGTCATCGAGGACATCAAGTCCGCCGTCGAGGCGTCATGCAACGGCGTCGTATCATGC
GCCGACATCCTGGCCCTCGCCACCAGGGACGGCGTCGTCCTG
AGCGGAGGGCCCTCGTGGACAGTGCCCCTCGGGCGGCGGGACGCCACAACGGCCAGCCTGAACGAAGCCAACATCAAC
CTCCCTGGTCCGTCGTCTAGCCTCTCTGCCCTCATCACCAGGTTCGCCAGCAAGGGCCTGAGCTTGCAGGAACTCGTGGCCCTCTCCGGCGCGCACACCGTCGGTTTTGCCCCCTGCCGC
GCCTTCCGCAACCGCATCTACAACGACGCTAACATCGACCTCCCCTTCGCCAACTCCCTCAAGGCCATCTGCCCGCCGTCTTCTCCGAACGGAGACGAGAACCTCTCGCCGATCGACATC
AGTACACCGACGGCCTTCGACAACGCCTACTACAGAAACCTCCTATCCTTGCGGGGTCTCCTTCACTCCGACCAGGAGCTCTTCAATAACGGCTCTGCGGATTCCATCGTCCAAAGCTAC
GCAGATAGCAGCTCCATCTTCTTCACAGACTTCGCGACGGCGATGGTAAATTTGGGCAGCATCGACCCCCTCACCGGTCCCAATGGGGAGATCAGGCGGGTCTGCAGCAGGGTGAACTGA

Retrieve as FASTA