Entry information : SpolPrx13 (Spipo18G0026900)
Entry ID 13213
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2015-06-17 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2015-06-17 (Christophe Dunand)
Peroxidase information: SpolPrx13 (Spipo18G0026900)
Name (synonym) SpolPrx13 (Spipo18G0026900)
Class Class III peroxidase    [Orthogroup: Prx183]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx13
start..stop
S start..stop
SpolPrx15 432 5e-154 1..320 1..316
SpolPrx11 431 3e-153 20..320 18..319
SpolPrx27 425 4e-151 1..320 1..313
VvPrx20 423 4e-150 16..320 13..317
Literature and cross-references SpolPrx13 (Spipo18G0026900)
Protein sequence: SpolPrx13 (Spipo18G0026900)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   321 (294)
PWM (Da):   %s   34389.25 (31653.8) Transmb domain:   %s   i7-29o
PI (pH):   %s   9.44 (9.67) Peptide Signal:   %s   cut: 27 range:27-320
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAATHSALSL ASSLLVLLLF VCTAHAQLRP NFYSSTCPNL NRIVQKTMRT AVKNDPTLAA SMIRLFFHDC FVNGCDASVL LADTAFFTGE QNAFPNRNSI RGMDVVERIK SAVEASCNAT  VSCADILALA TRDGVVLSGG PSWAVPLGRR DARTASQSAA NSNLPGPSSS LSALVSSFAN QGLSLRDLVA LSGAHTFGVA RCATFRNRIY NDANIEPIFA RSTQANCPRS GRDTNPSPLD 
VGTPRAFDNA YYRNLMSRRG LLHSDQELFN NGSADSIVRR YVASSSIFFR DFAAAMVRMG NISPLTGSNG EIRRVCSRVN * 

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2). Incorrect prediction from Phytozome (PS is missing du to frame shift).
Promoter
Send to BLAST
Send to cis Analysis
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGAGGTAAGA AAATGGAACG AAAAACTAAT TGAAAAGGGG TAAAAATGCA GAAAATTCTT AATCTCGTCA TCTTCCTGTC ACCCAGACGA CGGAATAAGA CAAATCGAAA ATAAAACAAT  AAATTGTATT CGTACCTGTC ACTCCGCTTG TCCGTCGCCC GAAAACAGAA TACCGGAAAA TGAATGCGAA ATGATCTAAA AATATTTTAA AAAGAATCCT TAATCTCGTC GTCTTCATGT  CACCCAGACG ACCGATTAAG AAATAACGAA AATAAAGTGG AATCAAAAGA TAAATCAAAC TCGTAAATGT CCGACGTCGC TTCGCTCGTC TCCGCGTGTC ACCCGGAGAG TATTCGACCC  TAGAAGCTCC CCTTCTTCAT CAAATCTTCC GCCTTTTTTA TCCTCTGGAA ACCTTCCTCC CTTTGCCATG GAGCCTCCTT CCGATTTTCA TGCAATAATT CTCAACAATC ATTCTGAAAT  CCGAAATTAT CTCCGTCCAT TTCACCGGCC AAGAGAGGGT GCGAAAGTGG CGTACGTCTT ATTGTTGATG AGAAAAAAGA ATATATAAAA CATAGACCTG AAACCTTCAA TATGAGCCTT  CATAAGTGGG TGTGTTATCG CAAGACTCAA TTAAGTACTT TAGAGTTAAA TGTGTCTAGA TTAAAATCTG CTGCCTAGAT GGGTGACCTC CTTAGGAAGC CAATGTCAAT GGGTCACCCA  GCCCACTACA CTAAGATCAA GGGCCAACCG CCTTAGTCCA ACAATATAAA TATGGACTCC TGAGAGCCTT CAAATTCTGC TAAACTACAT ATCTTATCAC CCACTCGAGG ATCAAAGCAG  ATCTTCGTCA GTTTTTGGGC AGCCGGACAA ACGGAGGCAC TTACATTACC GAATAACGAT GCGTTATGAC ATGGTTTTAT TTCCATACGG TAGACGGGAA TGCTTGACTA TGGGCACCCA  TCGACCTCTC TCAACGCTAT GTTACAATGG TTTCCCTCAG CACCACCTCA CTTATATCTA TTTGCAAGTG AATTTCACCG ATAAAATTAT GACTAAGTTT TCATATAAAA TAAACCATGA  ACAGAAAGTA TTAGCATCAT AAAATGGATA CATGCACGCG TACTTCTATA AAGATCTAAA GTTCAAAATT AATGTCAGAA GATTATATAA CAAGGAAAAG GAATATATTT TTTTATTTCG  AATCTTAAGC ATTCGGCGGT GGGCGTATGA ATTTAACTTG CCGTGTCCGA TCATGAGTAC GACGCACGAT CACATCCCAG GAAAAGAAAG ACCAAAACAA ATCCAACAGG CAATGAGCCG  ACCTTTGACT TTTAACTGGT AAAACATCCG GATGTGATTG AGACTGTCTG CGAATGTGGA ACGGATTAAA TCTCTACCGG AAATTTCCAT CTATTGGATG GCTTTGGTAG TGCCTGGTGT  TACGAAGCTA GGCTTTTCAA GAGCAACCCA ATACCCGACT TTCTACTACG GTGAAATATG ACATGCCTGC AGAGGGCTTT CAATGATCTC CGGAAGAAAT AGGCGACCAA TCGAATATGT  TTTCTTGTTC CGCTCTGGTT TTAACTGTAA AATCTTAGAA TGTTTCGAGG CATAAGACAA TGCCGACGCA TTCTCCCTCT CTCTTTGAGA TGGGAACTGC ATTAGCCGTC ACCTCAAAAG  CCGACTTCGG AGGGTCTACT TCCCTCCTAC TCCGTCCAGC CTGTCGCCTT GCCAACAAGA GAAGGTTTCC CTGGTCAATC GCGTATCGGT TCCGGACAGG CCTCACGCGG GGAGATGACG  ACTACGACCC TCCACTCCCG CGGCGGCCAC GACATCGCAT GCTACCGTCT ATATAAGAAG CAGAATCCCC CCAGGGCTTC ATCACACACC CCAAAACTAA AGCTACAGAG AAAGATAGAG 
CTTGAGGGAG AAGAAGATAT AGAGAGAGAC ACACACAGGC ACATTTTCGG ATAGAGAAAG CCCTATTTCC ATCACTTGCA 

Retrieve as FASTA  
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCGCCA CTCACAGCGC GTTGTCTCTT GCCTCATCCC TCCTCGTCCT CCTCCTGTTC GTGTGCACCG CACACGCGCA GCTGAGGCCG AACTTCTACT CGTCCACCTG CCCTAACCTG  AACAGAATCG TCCAAAAAAC CATGCGAACT GCCGTCAAGA ACGAnCCGAC GCTTGCCGCC TCCATGATTC GCCTCTTCTT CCACGACTGC TTTGTCAACG TAAGTGCACG TACTAGAGAA  TAAACTTTTC ACAAGACGGA CGGCCGGTCG TCTCGCCTCG CCGCCGCGAC GGTTCTAATC CCGACTTGTG TGATCATGCA GGGCTGCGAC GCATCGGTGC TCCTGGCTGA CACCGCGTTC  TTCACTGGCG AACAGAACGC CTTTCCGAAC CGAAACTCCA TTCGAGGCAT GGACGTCGTC GAGAGGATCA AGTCCGCCGT CGAGGCATCG TGCAACGCCA CGGTGTCGTG CGCCGACATC  CTGGCTCTCG CCACCAGGGA CGGCGTCGTC TTGGTGACTG TCCCAAAATC CTCCCCTCAG GCCGTTTAGC CTCTGTCGAA CGAGCCCCCT CTCTAACCGC AGGAGACTGA CTGCCTTTTT  CCATTCAGAG CGGAGGACCC TCATGGGCGG TGCCCCTCGG ACGGAGGGAC GCGAGGACGG CGAGCCAGAG CGCAGCTAAC AGCAACCTCC CGGGCCCTTC GTCCAGCCTC TCCGCCCTCG  TCTCCAGCTT CGCCAATCAG GGCCTTAGTC TGCGGGACCT GGTGGCCCTC TCCGGCGCGC ACACCTTCGG CGTCGCCCGA TGCGCTACCT TCCGCAACCG CATTTACAAC GACGCCAACA  TCGAACCCAT CTTCGCCCGC TCAACCCAGG CCAACTGCCC GCGGTCCGGC CGAGACACCA ACCCCTCCCC GCTAGACGTC GGTACCCCCA GGGCCTTTGA CAACGCCTAC TACCGCAACC  TCATGTCCCG GCGTGGTCTC CTGCACTCCG ACCAGGAGCT ATTCAACAAC GGCTCCGCAG ACTCCATCGT CCGCCGCTAC GTGGCCAGCA GCTCGATCTT CTTTAGAGAT TTCGCGGCGG 
CGATGGTGAG GATGGGAAAC ATCAGCCCCC TCACCGGTTC CAACGGGGAG ATCAGGCGGG TCTGCAGTAG GGTGAACTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCGCCA CTCACAGCGC GTTGTCTCTT GCCTCATCCC TCCTCGTCCT CCTCCTGTTC GTGTGCACCG CACACGCGCA GCTGAGGCCG AACTTCTACT CGTCCACCTG CCCTAACCTG  AACAGAATCG TCCAAAAAAC CATGCGAACT GCCGTCAAGA ACGAnCCGAC GCTTGCCGCC TCCATGATTC GCCTCTTCTT CCACGACTGC TTTGTCAACG GCTGCGACGC ATCGGTGCTC  CTGGCTGACA CCGCGTTCTT CACTGGCGAA CAGAACGCCT TTCCGAACCG AAACTCCATT CGAGGCATGG ACGTCGTCGA GAGGATCAAG TCCGCCGTCG AGGCATCGTG CAACGCCACG  GTGTCGTGCG CCGACATCCT GGCTCTCGCC ACCAGGGACG GCGTCGTCTT GAGCGGAGGA CCCTCATGGG CGGTGCCCCT CGGACGGAGG GACGCGAGGA CGGCGAGCCA GAGCGCAGCT  AACAGCAACC TCCCGGGCCC TTCGTCCAGC CTCTCCGCCC TCGTCTCCAG CTTCGCCAAT CAGGGCCTTA GTCTGCGGGA CCTGGTGGCC CTCTCCGGCG CGCACACCTT CGGCGTCGCC  CGATGCGCTA CCTTCCGCAA CCGCATTTAC AACGACGCCA ACATCGAACC CATCTTCGCC CGCTCAACCC AGGCCAACTG CCCGCGGTCC GGCCGAGACA CCAACCCCTC CCCGCTAGAC  GTCGGTACCC CCAGGGCCTT TGACAACGCC TACTACCGCA ACCTCATGTC CCGGCGTGGT CTCCTGCACT CCGACCAGGA GCTATTCAAC AACGGCTCCG CAGACTCCAT CGTCCGCCGC  TACGTGGCCA GCAGCTCGAT CTTCTTTAGA GATTTCGCGG CGGCGATGGT GAGGATGGGA AACATCAGCC CCCTCACCGG TTCCAACGGG GAGATCAGGC GGGTCTGCAG TAGGGTGAAC 
TGA 

Retrieve as FASTA